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YVDT_BACSU
ID   YVDT_BACSU              Reviewed;         194 AA.
AC   O07001; Q795H5;
DT   20-JAN-2009, integrated into UniProtKB/Swiss-Prot.
DT   01-JUL-1997, sequence version 1.
DT   03-AUG-2022, entry version 131.
DE   RecName: Full=Uncharacterized HTH-type transcriptional regulator YvdT;
GN   Name=yvdT; OrderedLocusNames=BSU34480;
OS   Bacillus subtilis (strain 168).
OC   Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX   NCBI_TaxID=224308;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC   STRAIN=168;
RA   Denizot F.;
RL   Submitted (APR-1997) to the EMBL/GenBank/DDBJ databases.
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=168;
RX   PubMed=9384377; DOI=10.1038/36786;
RA   Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V.,
RA   Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R.,
RA   Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S.,
RA   Bruschi C.V., Caldwell B., Capuano V., Carter N.M., Choi S.-K.,
RA   Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F.,
RA   Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D.,
RA   Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M.,
RA   Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P.,
RA   Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K.,
RA   Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S.,
RA   Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y.,
RA   Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G.,
RA   Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J.,
RA   Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C.,
RA   Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S.,
RA   Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B.,
RA   Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S.,
RA   Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M.,
RA   Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y.,
RA   Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J.,
RA   Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A.,
RA   Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M.,
RA   Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S.,
RA   Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E.,
RA   Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K.,
RA   Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E.,
RA   Yoshikawa H., Danchin A.;
RT   "The complete genome sequence of the Gram-positive bacterium Bacillus
RT   subtilis.";
RL   Nature 390:249-256(1997).
RN   [3]
RP   REVIEW, AND GENE FAMILY.
RX   PubMed=15944459; DOI=10.1128/mmbr.69.2.326-356.2005;
RA   Ramos J.L., Martinez-Bueno M., Molina-Henares A.J., Teran W., Watanabe K.,
RA   Zhang X., Gallegos M.T., Brennan R., Tobes R.;
RT   "The TetR family of transcriptional repressors.";
RL   Microbiol. Mol. Biol. Rev. 69:326-356(2005).
RN   [4]
RP   X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS).
RA   Su X.-D., Yu Y.-M., Nan J.;
RT   "Crystal structure of yvdT from Bacillus subtilis.";
RL   Submitted (NOV-2006) to the PDB data bank.
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DR   EMBL; Z94043; CAB08049.1; -; Genomic_DNA.
DR   EMBL; AL009126; CAB15453.1; -; Genomic_DNA.
DR   PIR; C70035; C70035.
DR   RefSeq; NP_391328.1; NC_000964.3.
DR   RefSeq; WP_003244443.1; NZ_CP053102.1.
DR   PDB; 2F07; X-ray; 2.30 A; A/B=1-194.
DR   PDBsum; 2F07; -.
DR   AlphaFoldDB; O07001; -.
DR   SMR; O07001; -.
DR   STRING; 224308.BSU34480; -.
DR   PaxDb; O07001; -.
DR   PRIDE; O07001; -.
DR   EnsemblBacteria; CAB15453; CAB15453; BSU_34480.
DR   GeneID; 936423; -.
DR   KEGG; bsu:BSU34480; -.
DR   PATRIC; fig|224308.179.peg.3735; -.
DR   eggNOG; COG1309; Bacteria.
DR   InParanoid; O07001; -.
DR   OMA; KWEAIYQ; -.
DR   PhylomeDB; O07001; -.
DR   BioCyc; BSUB:BSU34480-MON; -.
DR   EvolutionaryTrace; O07001; -.
DR   Proteomes; UP000001570; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR001647; HTH_TetR.
DR   InterPro; IPR036271; Tet_transcr_reg_TetR-rel_C_sf.
DR   InterPro; IPR041603; YvdT_C.
DR   Pfam; PF17934; TetR_C_26; 1.
DR   Pfam; PF00440; TetR_N; 1.
DR   PRINTS; PR00455; HTHTETR.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   SUPFAM; SSF48498; SSF48498; 1.
DR   PROSITE; PS50977; HTH_TETR_2; 1.
PE   1: Evidence at protein level;
KW   3D-structure; DNA-binding; Reference proteome; Repressor; Transcription;
KW   Transcription regulation.
FT   CHAIN           1..194
FT                   /note="Uncharacterized HTH-type transcriptional regulator
FT                   YvdT"
FT                   /id="PRO_0000360524"
FT   DOMAIN          6..66
FT                   /note="HTH tetR-type"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00335"
FT   DNA_BIND        29..48
FT                   /note="H-T-H motif"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00335"
FT   HELIX           8..23
FT                   /evidence="ECO:0007829|PDB:2F07"
FT   TURN            25..27
FT                   /evidence="ECO:0007829|PDB:2F07"
FT   HELIX           30..37
FT                   /evidence="ECO:0007829|PDB:2F07"
FT   HELIX           41..47
FT                   /evidence="ECO:0007829|PDB:2F07"
FT   STRAND          49..51
FT                   /evidence="ECO:0007829|PDB:2F07"
FT   HELIX           54..72
FT                   /evidence="ECO:0007829|PDB:2F07"
FT   HELIX           80..111
FT                   /evidence="ECO:0007829|PDB:2F07"
FT   HELIX           115..138
FT                   /evidence="ECO:0007829|PDB:2F07"
FT   HELIX           148..167
FT                   /evidence="ECO:0007829|PDB:2F07"
FT   HELIX           176..191
FT                   /evidence="ECO:0007829|PDB:2F07"
SQ   SEQUENCE   194 AA;  22227 MW;  0F5CD6A0780BAF39 CRC64;
     MPKQTSGKYE KILQAAIEVI SEKGLDKASI SDIVKKAGTA QGTFYLYFSS KNALIPAIAE
     NLLTHTLDQI KGRLHGDEDF WTVLDILIDE TFLITERHKD IIVLCYSGLA IDHSMEKWET
     IYQPYYSWLE KIINKAIANH EVTEGINSKW TARTIINLVE NTAERFYIGF EQDENVEVYK
     KEIFTFLKRS LGTA
 
 
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