CC167_DANRE
ID CC167_DANRE Reviewed; 100 AA.
AC Q5RHZ2; A3KNS5; B0S617;
DT 23-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT 21-DEC-2004, sequence version 1.
DT 03-AUG-2022, entry version 83.
DE RecName: Full=Coiled-coil domain-containing protein 167;
GN Name=ccdc167; ORFNames=si:ch211-214j24.7;
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Danionidae; Danioninae; Danio.
OX NCBI_TaxID=7955;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen;
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M.,
RA Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I.,
RA Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.,
RA White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y.,
RA Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B.,
RA Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S.,
RA Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S.,
RA Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N.,
RA Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J.,
RA Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J.,
RA Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D.,
RA McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S.,
RA Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E.,
RA Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A.,
RA Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P.,
RA Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C.,
RA Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C.,
RA Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M.,
RA Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C., Raddatz G.,
RA Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F.,
RA Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M.,
RA Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M.,
RA de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C.,
RA Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the human
RT genome.";
RL Nature 496:498-503(2013).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC TISSUE=Embryo;
RG NIH - Zebrafish Gene Collection (ZGC) project;
RL Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Single-pass membrane
CC protein {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q5RHZ2-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q5RHZ2-2; Sequence=VSP_034840;
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DR EMBL; BX323558; CAI11786.2; -; Genomic_DNA.
DR EMBL; BX323558; CAQ14315.1; -; Genomic_DNA.
DR EMBL; BC133988; AAI33989.1; -; mRNA.
DR RefSeq; NP_001315525.1; NM_001328596.1. [Q5RHZ2-1]
DR AlphaFoldDB; Q5RHZ2; -.
DR SMR; Q5RHZ2; -.
DR STRING; 7955.ENSDARP00000067379; -.
DR PaxDb; Q5RHZ2; -.
DR Ensembl; ENSDART00000137966; ENSDARP00000118096; ENSDARG00000045850. [Q5RHZ2-1]
DR Ensembl; ENSDART00000144658; ENSDARP00000117654; ENSDARG00000045850. [Q5RHZ2-1]
DR GeneID; 556080; -.
DR KEGG; dre:556080; -.
DR CTD; 154467; -.
DR ZFIN; ZDB-GENE-041210-79; ccdc167.
DR eggNOG; ENOG502SAF4; Eukaryota.
DR GeneTree; ENSGT00390000010210; -.
DR HOGENOM; CLU_152032_0_0_1; -.
DR InParanoid; Q5RHZ2; -.
DR OMA; IYACWTM; -.
DR OrthoDB; 1588154at2759; -.
DR PhylomeDB; Q5RHZ2; -.
DR TreeFam; TF336097; -.
DR PRO; PR:Q5RHZ2; -.
DR Proteomes; UP000000437; Genome assembly.
DR Proteomes; UP000814640; Chromosome 4.
DR Bgee; ENSDARG00000045850; Expressed in granulocyte and 29 other tissues.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR InterPro; IPR028194; CCDC-167.
DR PANTHER; PTHR31759; PTHR31759; 1.
DR Pfam; PF15188; CCDC-167; 1.
PE 4: Predicted;
KW Alternative splicing; Coiled coil; Membrane; Reference proteome;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..100
FT /note="Coiled-coil domain-containing protein 167"
FT /id="PRO_0000308552"
FT TRANSMEM 82..99
FT /note="Helical"
FT /evidence="ECO:0000255"
FT COILED 14..81
FT /evidence="ECO:0000255"
FT VAR_SEQ 67..100
FT /note="EKDLQVLRGENRRNMMLSVALLAISALFYYTFIY -> GIYGPRLTPSRFPS
FT TF (in isoform 2)"
FT /evidence="ECO:0000305"
FT /id="VSP_034840"
FT CONFLICT 10
FT /note="E -> G (in Ref. 2; AAI33989)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 100 AA; 12007 MW; 840AD19257FE9A93 CRC64;
MTRTRTVKKE KISVASEIDR VEERKLQCKN SLERAEFRKR KQQLSDDDRL ALEDEMTILN
ERVEKYEKDL QVLRGENRRN MMLSVALLAI SALFYYTFIY