ZIP4L_ORYSJ
ID ZIP4L_ORYSJ Reviewed; 953 AA.
AC Q5N829; A0A0N7KE78; C7IXP2; Q0JH13;
DT 04-MAR-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-FEB-2005, sequence version 1.
DT 25-MAY-2022, entry version 94.
DE RecName: Full=TPR repeat-containing protein ZIP4 {ECO:0000305};
DE AltName: Full=Protein ZIP4 homolog {ECO:0000305};
DE Short=OsZIP4 {ECO:0000303|PubMed:31266799};
GN Name=ZIP4 {ECO:0000303|PubMed:22393242};
GN OrderedLocusNames=Os01g0890900 {ECO:0000312|EMBL:BAH91418.1},
GN LOC_Os01g66690 {ECO:0000305};
GN ORFNames=B1078G07.1 {ECO:0000312|EMBL:BAD87533.1},
GN B1099D03.58 {ECO:0000312|EMBL:BAD82387.1},
GN OsJ_04366 {ECO:0000312|EMBL:EAZ14445.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP FUNCTION, SUBCELLULAR LOCATION, AND DISRUPTION PHENOTYPE.
RX PubMed=22393242; DOI=10.1242/jcs.090993;
RA Shen Y., Tang D., Wang K., Wang M., Huang J., Luo W., Luo Q., Hong L.,
RA Li M., Cheng Z.;
RT "ZIP4 in homologous chromosome synapsis and crossover formation in rice
RT meiosis.";
RL J. Cell Sci. 125:2581-2591(2012).
RN [7]
RP INTERACTION WITH HEI10 AND SHOC1.
RX PubMed=31266799; DOI=10.1104/pp.19.00082;
RA Zhang J., Wang C., Higgins J.D., Kim Y.J., Moon S., Jung K.H., Qu S.,
RA Liang W.;
RT "A multiprotein complex regulates interference-sensitive crossover
RT formation in rice.";
RL Plant Physiol. 181:221-235(2019).
CC -!- FUNCTION: Required for crossover formation, complete synapsis of
CC homologous chromosomes and bivalent formation during meiosis. Is
CC specific to recombination events resulting in interference-sensitive
CC crossovers (class I meiotic crossover) and works cooperatively with
CC MER3 to promote crossovers. {ECO:0000269|PubMed:22393242}.
CC -!- SUBUNIT: Interacts with HEI10 and SHOC1. {ECO:0000269|PubMed:31266799}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:22393242}. Chromosome
CC {ECO:0000269|PubMed:22393242}. Note=Detected in punctuate foci onto the
CC chromosomes in prophase I meiocytes. {ECO:0000269|PubMed:22393242}.
CC -!- DISRUPTION PHENOTYPE: Complete loss of fertility due to defect in
CC meiosis. {ECO:0000269|PubMed:22393242}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF06965.1; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305};
CC Sequence=BAH91418.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAS75657.1; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305};
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DR EMBL; AP003407; BAD87533.1; -; Genomic_DNA.
DR EMBL; AP003431; BAD82387.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF06965.1; ALT_INIT; Genomic_DNA.
DR EMBL; AP008207; BAH91418.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014957; BAS75657.1; ALT_INIT; Genomic_DNA.
DR EMBL; CM000138; EAZ14445.1; -; Genomic_DNA.
DR RefSeq; XP_015621103.1; XM_015765617.1.
DR AlphaFoldDB; Q5N829; -.
DR STRING; 4530.OS01T0890900-00; -.
DR PaxDb; Q5N829; -.
DR PRIDE; Q5N829; -.
DR EnsemblPlants; Os01t0890900-00; Os01t0890900-00; Os01g0890900.
DR GeneID; 4324913; -.
DR Gramene; Os01t0890900-00; Os01t0890900-00; Os01g0890900.
DR KEGG; osa:4324913; -.
DR eggNOG; KOG4814; Eukaryota.
DR HOGENOM; CLU_307264_0_0_1; -.
DR InParanoid; Q5N829; -.
DR OrthoDB; 681770at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000007752; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q5N829; OS.
DR GO; GO:0005694; C:chromosome; IDA:UniProtKB.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0007129; P:homologous chromosome pairing at meiosis; IMP:UniProtKB.
DR GO; GO:0007131; P:reciprocal meiotic recombination; IMP:UniProtKB.
DR GO; GO:0071139; P:resolution of recombination intermediates; IMP:UniProtKB.
DR Gene3D; 1.25.40.10; -; 2.
DR InterPro; IPR013940; Spo22/ZIP4/TEX11.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR Pfam; PF08631; SPO22; 1.
DR SUPFAM; SSF48452; SSF48452; 1.
PE 1: Evidence at protein level;
KW Chromosome; DNA recombination; Meiosis; Nucleus; Reference proteome;
KW Repeat; TPR repeat.
FT CHAIN 1..953
FT /note="TPR repeat-containing protein ZIP4"
FT /id="PRO_0000432120"
FT REPEAT 129..162
FT /note="TPR 1"
FT /evidence="ECO:0000255"
FT REPEAT 432..465
FT /note="TPR 2"
FT /evidence="ECO:0000255"
FT REPEAT 473..506
FT /note="TPR 3"
FT /evidence="ECO:0000255"
FT REGION 248..269
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 925..953
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 939..953
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 953 AA; 102607 MW; 466232BCE4ACA65D CRC64;
MKISELSPEY REPPSHAGLI ADLSKAVSDV ESFAASATAP EKLAADLRRI LTSLASAASS
SSFTESLSVQ IWRLGTRLWN AVVDRANSAA LAGGPAALAV EAEIRQAAPE LLLLAGIPNG
VPSAAAKVAS FFHRSGLAWL DLGRVDLASA CFEKATPLVS AAATEDRGVL LELNLARARA
ASDAGDQALA VALLSRSKPL AAASPEGAKS LAQGYLSIGE ATLAAKHSNP AVEASTLFTE
ALDLCEKAAS PSSSSPRTPP YGGATPKTPN LEGLKRRCLR FLALERLQAQ DYEGVLRCIR
VSRASMGLEE EHPSIGVMAM RAWIGSGNMA EADKELERLM ANALATENLC VSAAEAYLAA
AGPEAARKVL IALAARCRAG GAAAAVRVVK QVIDGGGGGI GRARAIAELV SDERVVALFD
GPGNTHERGT MHALLWNCGT EHFRAKNYDT SADLIERSML YVSRDEESRS RRADCFRVLS
ICHIALQHLD RALEFVNEAY KVEPNIKCAF LKVKINLQKG EEDEAFKQMK TMVGCVDFNP
EFLTLTAHEA MSCKSFGVAV ASLSYLLGLY SAERPMPMPE VAVLRNLIEL LSREPGTEAE
ILKYSRRAKQ RMADLGVESF FGSGIVGGRE LNWFADLSWN MGLRASKEKK YNFGAEFFEL
AAEFFSSRNA ECDENRSKVC KALIMAVTIM LNAEELNNSP LSDSDIKKGV EMLSRAGKLL
PLISPSVPVA SDQLEANNFL YLHTFNSYQL MGRMGTPAHP QQLQLIKNFA SSKACTPANL
LTLGVTASKG ALPNMLAAEF SLKACITTAL ASQSPNYRVI SCALRKLACL AGLQDLNGSK
SDAAYDVFQQ AYQIVVGLKE GEYPVEEGQW LVATAWNMSC LPLRLHQAKV ARKWMKMGLD
LARHLEGMKE RIASMQTTFE NFERVSGDEP DECSQEEAPK ASISGSMSQP VLV
