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ZWIP3_ARATH
ID   ZWIP3_ARATH             Reviewed;         337 AA.
AC   Q9SGD1;
DT   26-NOV-2014, integrated into UniProtKB/Swiss-Prot.
DT   01-MAY-2000, sequence version 1.
DT   03-AUG-2022, entry version 161.
DE   RecName: Full=Zinc finger protein WIP3;
DE   AltName: Full=WIP-domain protein 3 {ECO:0000303|PubMed:11782451};
DE            Short=AtWIP3 {ECO:0000303|PubMed:11782451};
GN   Name=WIP3 {ECO:0000303|PubMed:11782451};
GN   OrderedLocusNames=At1g08290 {ECO:0000312|Araport:AT1G08290};
GN   ORFNames=T23G18.15 {ECO:0000312|EMBL:AAF18247.1};
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11782451; DOI=10.1101/gad.212702;
RA   Sagasser M., Lu G.-H., Hahlbrock K., Weisshaar B.;
RT   "A. thaliana TRANSPARENT TESTA 1 is involved in seed coat development and
RT   defines the WIP subfamily of plant zinc finger proteins.";
RL   Genes Dev. 16:138-149(2002).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130712; DOI=10.1038/35048500;
RA   Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA   Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA   Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA   Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA   Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA   Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA   Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA   Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA   Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA   Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA   Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA   Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA   Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA   Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA   Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT   "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL   Nature 408:816-820(2000).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11910074; DOI=10.1126/science.1071006;
RA   Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA   Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA   Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA   Shinagawa A., Shinozaki K.;
RT   "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL   Science 296:141-145(2002).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA   Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA   Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA   Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA   Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA   Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA   Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA   Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA   Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA   Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA   Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA   Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
RN   [6]
RP   SUBCELLULAR LOCATION, AND ZINC-FINGER.
RX   PubMed=20541552; DOI=10.1016/j.febslet.2010.06.007;
RA   Appelhagen I., Huep G., Lu G.H., Strompen G., Weisshaar B., Sagasser M.;
RT   "Weird fingers: functional analysis of WIP domain proteins.";
RL   FEBS Lett. 584:3116-3122(2010).
CC   -!- FUNCTION: Probable transcriptional regulator.
CC       {ECO:0000305|PubMed:20541552}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:20541552}.
CC   -!- SIMILARITY: Belongs to the WIP C2H2-type zinc-finger protein family.
CC       {ECO:0000305}.
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DR   EMBL; AF254448; AAL55723.1; -; mRNA.
DR   EMBL; AC011438; AAF18247.1; -; Genomic_DNA.
DR   EMBL; CP002684; AEE28270.1; -; Genomic_DNA.
DR   EMBL; AK118851; BAC43439.1; -; mRNA.
DR   EMBL; AY090918; AAM13913.1; -; mRNA.
DR   RefSeq; NP_172306.1; NM_100702.4.
DR   AlphaFoldDB; Q9SGD1; -.
DR   BioGRID; 22590; 8.
DR   IntAct; Q9SGD1; 3.
DR   STRING; 3702.AT1G08290.1; -.
DR   PaxDb; Q9SGD1; -.
DR   PRIDE; Q9SGD1; -.
DR   ProteomicsDB; 242951; -.
DR   EnsemblPlants; AT1G08290.1; AT1G08290.1; AT1G08290.
DR   GeneID; 837349; -.
DR   Gramene; AT1G08290.1; AT1G08290.1; AT1G08290.
DR   KEGG; ath:AT1G08290; -.
DR   Araport; AT1G08290; -.
DR   TAIR; locus:2200003; AT1G08290.
DR   eggNOG; KOG1721; Eukaryota.
DR   HOGENOM; CLU_052255_0_0_1; -.
DR   InParanoid; Q9SGD1; -.
DR   OMA; DHDEKEC; -.
DR   OrthoDB; 1318335at2759; -.
DR   PhylomeDB; Q9SGD1; -.
DR   PRO; PR:Q9SGD1; -.
DR   Proteomes; UP000006548; Chromosome 1.
DR   ExpressionAtlas; Q9SGD1; baseline and differential.
DR   GO; GO:0005634; C:nucleus; IDA:TAIR.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0048856; P:anatomical structure development; IBA:GO_Central.
DR   GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR   InterPro; IPR043584; WIP1/2/3/4/5/6.
DR   InterPro; IPR036236; Znf_C2H2_sf.
DR   InterPro; IPR013087; Znf_C2H2_type.
DR   PANTHER; PTHR45878; PTHR45878; 1.
DR   SMART; SM00355; ZnF_C2H2; 3.
DR   SUPFAM; SSF57667; SSF57667; 2.
DR   PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1.
DR   PROSITE; PS50157; ZINC_FINGER_C2H2_2; 2.
PE   2: Evidence at transcript level;
KW   Metal-binding; Nucleus; Reference proteome; Repeat; Transcription;
KW   Transcription regulation; Zinc; Zinc-finger.
FT   CHAIN           1..337
FT                   /note="Zinc finger protein WIP3"
FT                   /id="PRO_0000431317"
FT   ZN_FING         180..202
FT                   /note="C2H2-type 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00042"
FT   ZN_FING         228..260
FT                   /note="C2H2-type 2; atypical"
FT                   /evidence="ECO:0000303|PubMed:20541552"
FT   ZN_FING         265..287
FT                   /note="C2H2-type 3; atypical"
FT                   /evidence="ECO:0000303|PubMed:20541552"
FT   ZN_FING         291..316
FT                   /note="C2H2-type 4; atypical"
FT                   /evidence="ECO:0000303|PubMed:20541552"
FT   MOTIF           257..260
FT                   /note="Nuclear localization signal"
FT                   /evidence="ECO:0000250|UniProtKB:Q8VWG3"
FT   MOTIF           300..303
FT                   /note="Nuclear localization signal"
FT                   /evidence="ECO:0000250|UniProtKB:Q8VWG3"
SQ   SEQUENCE   337 AA;  38596 MW;  BEA02344F5C3ED05 CRC64;
     MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF
     LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV TLQIGFPKYH RGSSEDGSDI
     TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF
     ACSICSKTFN RYNNMQMHMW GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH
     PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
     HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
 
 
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