CCB13_ORYSJ
ID CCB13_ORYSJ Reviewed; 470 AA.
AC Q0JNK6; Q5NAB3; Q9LG64;
DT 15-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT 15-MAY-2007, sequence version 2.
DT 03-AUG-2022, entry version 100.
DE RecName: Full=Cyclin-B1-3;
DE AltName: Full=CYCB1;1;
DE AltName: Full=G2/mitotic-specific cyclin-B1-3;
DE Short=CycB1;3;
GN Name=CYCB1-3; Synonyms=CycB1-1;
GN OrderedLocusNames=Os01g0281200, LOC_Os01g17402; ORFNames=B1085F09.20;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
RA Zhang C.-L., Jiang X.-C., Slater A.;
RT "Characterization of a rice (Oryza sativa) cyclinB1 gene Orysa;CYCB1;1.";
RL Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16435118; DOI=10.1007/s00438-005-0093-5;
RA La H., Li J., Ji Z., Cheng Y., Li X., Jiang S., Venkatesh P.N.,
RA Ramachandran S.;
RT "Genome-wide analysis of cyclin family in rice (Oryza sativa L.).";
RL Mol. Genet. Genomics 275:374-386(2006).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q0JNK6-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q0JNK6-2; Sequence=VSP_025281, VSP_025282;
CC -!- SIMILARITY: Belongs to the cyclin family. Cyclin AB subfamily.
CC {ECO:0000305}.
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DR EMBL; AY647458; AAT67242.1; -; mRNA.
DR EMBL; AP002804; BAB00651.1; -; Genomic_DNA.
DR EMBL; AP002862; BAB17747.1; -; Genomic_DNA.
DR EMBL; AP003103; BAD81593.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF04672.2; -; Genomic_DNA.
DR EMBL; AP014957; BAS71599.1; -; Genomic_DNA.
DR EMBL; AK107209; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015643908.1; XM_015788422.1.
DR RefSeq; XP_015643917.1; XM_015788431.1. [Q0JNK6-2]
DR AlphaFoldDB; Q0JNK6; -.
DR SMR; Q0JNK6; -.
DR STRING; 39947.Q0JNK6; -.
DR PaxDb; Q0JNK6; -.
DR PRIDE; Q0JNK6; -.
DR EnsemblPlants; Os01t0281200-01; Os01t0281200-01; Os01g0281200. [Q0JNK6-2]
DR GeneID; 4326914; -.
DR Gramene; Os01t0281200-01; Os01t0281200-01; Os01g0281200. [Q0JNK6-2]
DR KEGG; osa:4326914; -.
DR InParanoid; Q0JNK6; -.
DR OMA; MHWGFQF; -.
DR OrthoDB; 993640at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q0JNK6; OS.
DR GO; GO:0000307; C:cyclin-dependent protein kinase holoenzyme complex; IBA:GO_Central.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0016538; F:cyclin-dependent protein serine/threonine kinase regulator activity; IBA:GO_Central.
DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW.
DR GO; GO:0044772; P:mitotic cell cycle phase transition; IBA:GO_Central.
DR GO; GO:0000079; P:regulation of cyclin-dependent protein serine/threonine kinase activity; IBA:GO_Central.
DR CDD; cd00043; CYCLIN; 2.
DR InterPro; IPR039361; Cyclin.
DR InterPro; IPR013763; Cyclin-like.
DR InterPro; IPR036915; Cyclin-like_sf.
DR InterPro; IPR004367; Cyclin_C-dom.
DR InterPro; IPR006671; Cyclin_N.
DR PANTHER; PTHR10177; PTHR10177; 1.
DR Pfam; PF02984; Cyclin_C; 1.
DR Pfam; PF00134; Cyclin_N; 1.
DR PIRSF; PIRSF001771; Cyclin_A_B_D_E; 1.
DR SMART; SM00385; CYCLIN; 2.
DR SMART; SM01332; Cyclin_C; 1.
DR SUPFAM; SSF47954; SSF47954; 2.
PE 2: Evidence at transcript level;
KW Alternative splicing; Cell cycle; Cell division; Cyclin;
KW Reference proteome.
FT CHAIN 1..470
FT /note="Cyclin-B1-3"
FT /id="PRO_0000287010"
FT VAR_SEQ 24
FT /note="G -> E (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_025281"
FT VAR_SEQ 25..71
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_025282"
FT CONFLICT 232
FT /note="M -> T (in Ref. 6; AK107209)"
FT /evidence="ECO:0000305"
FT CONFLICT 261
FT /note="P -> A (in Ref. 6; AK107209)"
FT /evidence="ECO:0000305"
FT CONFLICT 360
FT /note="L -> Q (in Ref. 6; AK107209)"
FT /evidence="ECO:0000305"
FT CONFLICT 420
FT /note="E -> G (in Ref. 6; AK107209)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 470 AA; 52887 MW; 07C5FF1729649F7D CRC64;
MASRRQWGAG AGAVDVPAQE RKGGKAATDH LLRAFFAVFF VLEGLSWRRR RRRDGEGVFL
LRYVACLLCL QAAKIARRPK TTTVVAQQPP RIRRALADVS NLVNGRAALP VVNRQKAAAA
AADKCRKPIK QRNENNKAAK PEVIVISSDS EKHKKNPAQR AASRRAPIQT LTSILTKCSR
ASDGVISPKK ELIYDIDASD SHNELAVVDY VEDIYRFYRN TENTYRPLCT YMVSQTEINE
RMRAILTDWL IEVHYRLMLM PETLYLTVYI IDQYLSLENV PRKELQLVGV SAMLIACKYE
ETWAPLVKDF LVISDNSFSR QQVLSTEKSI LNKLQWNLTV PTMYMFILRY LKAALGDEEL
EHMTFFYAEL ALVQYSMLFF APSVIAAAAV YAARCTLGLS PLWSDLLEYH TGLAEPQLLE
CARRLVSLHA AAPESRQKVV YKKYASPKLG AVSLHSPAKK LLPPPSPVAA
