CCD31_ORYSJ
ID CCD31_ORYSJ Reviewed; 342 AA.
AC Q69QB8;
DT 15-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT 15-MAY-2007, sequence version 2.
DT 03-AUG-2022, entry version 113.
DE RecName: Full=Cyclin-D3-1;
DE AltName: Full=G1/S-specific cyclin-D3-1;
DE Short=CycD3;1;
GN Name=CYCD3-1; OrderedLocusNames=Os06g0217900, LOC_Os06g11410;
GN ORFNames=P0644A02.8;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16435118; DOI=10.1007/s00438-005-0093-5;
RA La H., Li J., Ji Z., Cheng Y., Li X., Jiang S., Venkatesh P.N.,
RA Ramachandran S.;
RT "Genome-wide analysis of cyclin family in rice (Oryza sativa L.).";
RL Mol. Genet. Genomics 275:374-386(2006).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q69QB8-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q69QB8-2; Sequence=VSP_025283, VSP_025284;
CC -!- SIMILARITY: Belongs to the cyclin family. Cyclin D subfamily.
CC {ECO:0000305}.
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DR EMBL; AP005425; BAD36091.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF19067.1; -; Genomic_DNA.
DR EMBL; AP014962; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AK103765; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015643406.1; XM_015787920.1. [Q69QB8-1]
DR AlphaFoldDB; Q69QB8; -.
DR SMR; Q69QB8; -.
DR STRING; 4530.OS06T0217900-01; -.
DR PaxDb; Q69QB8; -.
DR PRIDE; Q69QB8; -.
DR GeneID; 4340499; -.
DR KEGG; osa:4340499; -.
DR eggNOG; KOG0656; Eukaryota.
DR InParanoid; Q69QB8; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR GO; GO:0000307; C:cyclin-dependent protein kinase holoenzyme complex; IBA:GO_Central.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0016538; F:cyclin-dependent protein serine/threonine kinase regulator activity; IBA:GO_Central.
DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW.
DR GO; GO:0044772; P:mitotic cell cycle phase transition; IBA:GO_Central.
DR GO; GO:0000079; P:regulation of cyclin-dependent protein serine/threonine kinase activity; IBA:GO_Central.
DR CDD; cd00043; CYCLIN; 1.
DR InterPro; IPR039361; Cyclin.
DR InterPro; IPR013763; Cyclin-like.
DR InterPro; IPR036915; Cyclin-like_sf.
DR InterPro; IPR004367; Cyclin_C-dom.
DR InterPro; IPR006671; Cyclin_N.
DR PANTHER; PTHR10177; PTHR10177; 1.
DR Pfam; PF02984; Cyclin_C; 1.
DR Pfam; PF00134; Cyclin_N; 1.
DR SMART; SM00385; CYCLIN; 2.
DR SMART; SM01332; Cyclin_C; 1.
DR SUPFAM; SSF47954; SSF47954; 1.
DR PROSITE; PS00292; CYCLINS; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Cell cycle; Cell division; Cyclin;
KW Reference proteome.
FT CHAIN 1..342
FT /note="Cyclin-D3-1"
FT /id="PRO_0000287027"
FT REGION 322..342
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 1..119
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_025283"
FT VAR_SEQ 120..128
FT /note="RFLSVFDLP -> MEQLHSEFQ (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_025284"
SQ SEQUENCE 342 AA; 38276 MW; 625309E6641D6530 CRC64;
MAPSFDFAAS ILLCAEDNTA ILDLGEESEE ISWVVGVDAS LGDLSMDFPL QSDDCIEALL
GREEQQHIPM EGYLQRLLLQ PDGLDLVAVR SDAIDWIWKV HELYKFGPLT AVLSVNYLDR
FLSVFDLPQE EACMTQLLAV ASLSLAAKME ETVVPHPLDL QVCDAKYVFE TRTIKRMELA
VLNALKWRMQ AVTACSFIDY YLHKFNDDDT PSTSALSRSV DLILSTCKVA EFLVFRPSEI
AASVALVALE EHETSMFERV ATCYKNLKKE RVLRCYEMIQ DKIIMRNIMR QSAGSVFSIP
KSPIGVLDAA ACISQQSEDT FVGSPATNYE SSASSKRRRI CR
