ID   CCD41_ORYSJ             Reviewed;         356 AA.
AC   Q6YXH8; A3BZP9; B7E976; Q8SBC0;
DT   15-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT   15-MAY-2007, sequence version 2.
DT   03-AUG-2022, entry version 106.
DE   RecName: Full=Cyclin-D4-1;
DE   AltName: Full=G1/S-specific cyclin-D4-1;
DE            Short=CycD4;1;
GN   Name=CYCD4-1; Synonyms=OSCYCD;
GN   OrderedLocusNames=Os09g0466100, LOC_Os09g29100;
GN   ORFNames=OJ1005_D12.23-1, OJ1005_D12.23-2, OsJ_028521;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RC   STRAIN=cv. Nipponbare;
RA   Nakashima M., Neogi P.B., Okano E., Hashimoto J., Sasaki T., Ichikawa H.;
RT   "Nucleotide sequence of a cDNA encoding a D-type cyclin from cell
RT   suspension culture of rice.";
RL   Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases.
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [7]
RP   GENE FAMILY, AND NOMENCLATURE.
RX   PubMed=16435118; DOI=10.1007/s00438-005-0093-5;
RA   La H., Li J., Ji Z., Cheng Y., Li X., Jiang S., Venkatesh P.N.,
RA   Ramachandran S.;
RT   "Genome-wide analysis of cyclin family in rice (Oryza sativa L.).";
RL   Mol. Genet. Genomics 275:374-386(2006).
CC   -!- SIMILARITY: Belongs to the cyclin family. Cyclin D subfamily.
CC       {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=BAD17512.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR   EMBL; AB080248; BAB85522.1; -; mRNA.
DR   EMBL; AP005676; BAD17511.1; -; Genomic_DNA.
DR   EMBL; AP005676; BAD17512.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; AP008215; BAF25331.1; -; Genomic_DNA.
DR   EMBL; AP014965; BAT08517.1; -; Genomic_DNA.
DR   EMBL; CM000146; EAZ45038.1; -; Genomic_DNA.
DR   EMBL; AK063940; BAG88923.1; -; mRNA.
DR   RefSeq; XP_015610698.1; XM_015755212.1.
DR   AlphaFoldDB; Q6YXH8; -.
DR   SMR; Q6YXH8; -.
DR   STRING; 4530.OS09T0466100-01; -.
DR   PaxDb; Q6YXH8; -.
DR   PRIDE; Q6YXH8; -.
DR   EnsemblPlants; Os09t0466100-01; Os09t0466100-01; Os09g0466100.
DR   GeneID; 4347313; -.
DR   Gramene; Os09t0466100-01; Os09t0466100-01; Os09g0466100.
DR   KEGG; osa:4347313; -.
DR   eggNOG; KOG0656; Eukaryota.
DR   HOGENOM; CLU_048040_1_1_1; -.
DR   InParanoid; Q6YXH8; -.
DR   OMA; VQFDNSS; -.
DR   OrthoDB; 1234739at2759; -.
DR   PlantReactome; R-OSA-9640760; G1 phase.
DR   PlantReactome; R-OSA-9640887; G1/S transition.
DR   Proteomes; UP000000763; Chromosome 9.
DR   Proteomes; UP000007752; Chromosome 9.
DR   Proteomes; UP000059680; Chromosome 9.
DR   ExpressionAtlas; Q6YXH8; baseline and differential.
DR   Genevisible; Q6YXH8; OS.
DR   GO; GO:0000307; C:cyclin-dependent protein kinase holoenzyme complex; IBA:GO_Central.
DR   GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0016538; F:cyclin-dependent protein serine/threonine kinase regulator activity; IBA:GO_Central.
DR   GO; GO:0051301; P:cell division; IEA:UniProtKB-KW.
DR   GO; GO:0044772; P:mitotic cell cycle phase transition; IBA:GO_Central.
DR   GO; GO:0000079; P:regulation of cyclin-dependent protein serine/threonine kinase activity; IBA:GO_Central.
DR   CDD; cd00043; CYCLIN; 1.
DR   InterPro; IPR039361; Cyclin.
DR   InterPro; IPR013763; Cyclin-like.
DR   InterPro; IPR036915; Cyclin-like_sf.
DR   InterPro; IPR004367; Cyclin_C-dom.
DR   InterPro; IPR006671; Cyclin_N.
DR   PANTHER; PTHR10177; PTHR10177; 1.
DR   Pfam; PF02984; Cyclin_C; 1.
DR   Pfam; PF00134; Cyclin_N; 1.
DR   SMART; SM00385; CYCLIN; 1.
DR   SMART; SM01332; Cyclin_C; 1.
DR   SUPFAM; SSF47954; SSF47954; 2.
DR   PROSITE; PS00292; CYCLINS; 1.
PE   2: Evidence at transcript level;
KW   Cell cycle; Cell division; Cyclin; Reference proteome.
FT   CHAIN           1..356
FT                   /note="Cyclin-D4-1"
FT                   /id="PRO_0000287031"
FT   CONFLICT        42..43
FT                   /note="RA -> IP (in Ref. 5; EAZ45038)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   356 AA;  38937 MW;  502AF4EB9CE8BCEA CRC64;
     MAALTSYEMA ASILLCAEDS SSVLGFGGEE EEEEEDVVAG KRARCAGPPP PPCVDVAGVD
     FAVPSEECVA RLVETEADHM PREDYAERLR AGGGDGDLDL RVRMDAIDWI WKVHSYYSFA
     PLTACLAVNY LDRFLSLYQL PDGKDWMTQL LAVACLSLAA KMEETDVPQS LDLQVGEERY
     VFEAKTIQRM ELLVLSTLKW RMQAVTPFSY VDYFLRELNG GDPPSGRSAL LSSELILCIA
     RGTECLGFRP SEIAAAVAAA VVGEEHAAFS HVNKERMSHC QEVIQAMELI HPKPSSPSRV
     FVSSSIPRSP TGVLDAAGCL SYRSDDSAVA SHYAASSWGY EHDSSPVSSK RRKISR