位置:首页 > 蛋白库 > CCD42_ORYSJ
CCD42_ORYSJ
ID   CCD42_ORYSJ             Reviewed;         383 AA.
AC   Q4KYM5; A0A0P0XHR2; Q5SD44; Q5SD46; Q6DMP1; Q6DMP6; Q6DMP7; Q6DMQ0; Q6DMQ7;
AC   Q6ZB91;
DT   15-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT   15-MAY-2007, sequence version 2.
DT   25-MAY-2022, entry version 91.
DE   RecName: Full=Cyclin-D4-2;
DE   AltName: Full=G1/S-specific cyclin-D4-2;
DE            Short=CycD4;2;
GN   Name=CYCD4-2; OrderedLocusNames=Os08g0479300, LOC_Os08g37390;
GN   ORFNames=OJ1113_A10.14, OsJ_026575;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [6]
RP   PARTIAL NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC   STRAIN=cv. Taipei 309;
RA   Elumalai S., Qu R., Sivamani T., Davis S.J., Au M.R., Gossett N.J.,
RA   Childress R.H., Navolio L.E., Hicks B.N.;
RT   "Partial putative D type cyclin in rice.";
RL   Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases.
RN   [7]
RP   GENE FAMILY, AND NOMENCLATURE.
RX   PubMed=16435118; DOI=10.1007/s00438-005-0093-5;
RA   La H., Li J., Ji Z., Cheng Y., Li X., Jiang S., Venkatesh P.N.,
RA   Ramachandran S.;
RT   "Genome-wide analysis of cyclin family in rice (Oryza sativa L.).";
RL   Mol. Genet. Genomics 275:374-386(2006).
CC   -!- SIMILARITY: Belongs to the cyclin family. Cyclin D subfamily.
CC       {ECO:0000305}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; AP004643; BAD09749.1; -; Genomic_DNA.
DR   EMBL; AP008214; BAF23968.1; -; Genomic_DNA.
DR   EMBL; AP014964; BAT05907.1; -; Genomic_DNA.
DR   EMBL; CM000145; EAZ43092.1; -; Genomic_DNA.
DR   EMBL; AK070025; -; NOT_ANNOTATED_CDS; mRNA.
DR   EMBL; AY659999; AAV65960.1; -; Genomic_DNA.
DR   EMBL; AY660022; AAV66348.1; -; Genomic_DNA.
DR   EMBL; AY660030; AAT72758.1; -; Genomic_DNA.
DR   EMBL; AY660533; AAT72760.1; -; Genomic_DNA.
DR   EMBL; AY660537; AAT72761.1; -; Genomic_DNA.
DR   EMBL; AY660569; AAT72763.1; -; Genomic_DNA.
DR   EMBL; AY660570; AAT72762.1; -; Genomic_DNA.
DR   EMBL; AY660573; AAV69066.1; -; Genomic_DNA.
DR   EMBL; AY660575; AAT72759.1; -; Genomic_DNA.
DR   RefSeq; XP_015648876.1; XM_015793390.1.
DR   AlphaFoldDB; Q4KYM5; -.
DR   SMR; Q4KYM5; -.
DR   STRING; 4530.OS08T0479300-01; -.
DR   PaxDb; Q4KYM5; -.
DR   PRIDE; Q4KYM5; -.
DR   EnsemblPlants; Os08t0479300-01; Os08t0479300-01; Os08g0479300.
DR   GeneID; 4345844; -.
DR   Gramene; Os08t0479300-01; Os08t0479300-01; Os08g0479300.
DR   KEGG; osa:4345844; -.
DR   eggNOG; KOG0656; Eukaryota.
DR   HOGENOM; CLU_048040_1_1_1; -.
DR   InParanoid; Q4KYM5; -.
DR   OMA; PKFLFEG; -.
DR   OrthoDB; 1234739at2759; -.
DR   PlantReactome; R-OSA-9640760; G1 phase.
DR   PlantReactome; R-OSA-9640887; G1/S transition.
DR   Proteomes; UP000000763; Chromosome 8.
DR   Proteomes; UP000007752; Chromosome 8.
DR   Proteomes; UP000059680; Chromosome 8.
DR   Genevisible; Q4KYM5; OS.
DR   GO; GO:0000307; C:cyclin-dependent protein kinase holoenzyme complex; IBA:GO_Central.
DR   GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0016538; F:cyclin-dependent protein serine/threonine kinase regulator activity; IBA:GO_Central.
DR   GO; GO:0051301; P:cell division; IEA:UniProtKB-KW.
DR   GO; GO:0044772; P:mitotic cell cycle phase transition; IBA:GO_Central.
DR   GO; GO:0000079; P:regulation of cyclin-dependent protein serine/threonine kinase activity; IBA:GO_Central.
DR   CDD; cd00043; CYCLIN; 1.
DR   InterPro; IPR039361; Cyclin.
DR   InterPro; IPR013763; Cyclin-like.
DR   InterPro; IPR036915; Cyclin-like_sf.
DR   InterPro; IPR004367; Cyclin_C-dom.
DR   InterPro; IPR006671; Cyclin_N.
DR   PANTHER; PTHR10177; PTHR10177; 1.
DR   Pfam; PF02984; Cyclin_C; 1.
DR   Pfam; PF00134; Cyclin_N; 1.
DR   SMART; SM00385; CYCLIN; 1.
DR   SMART; SM01332; Cyclin_C; 1.
DR   SUPFAM; SSF47954; SSF47954; 1.
DR   PROSITE; PS00292; CYCLINS; 1.
PE   2: Evidence at transcript level;
KW   Cell cycle; Cell division; Cyclin; Reference proteome.
FT   CHAIN           1..383
FT                   /note="Cyclin-D4-2"
FT                   /id="PRO_0000287032"
FT   REGION          51..70
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          313..335
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          354..383
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        313..334
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   CONFLICT        35..37
FT                   /note="VGE -> RWG (in Ref. 6; AAT72763)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        35
FT                   /note="V -> W (in Ref. 6; AAT72761)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        37
FT                   /note="E -> G (in Ref. 6; AAT72762/AAV66348)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        224
FT                   /note="K -> E (in Ref. 5; AK070025)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   383 AA;  41660 MW;  5F3FA684C85F16D5 CRC64;
     MAPSSSSCHD AAASMLLCAE DNSSILWLED EEGEVGERRS GGCRSMVGDL AAGGGGGSGG
     GGVEEEEDMF PRQSEECVAS LVEREQAHMP RADYGERLRG GGGDVDLRVR SEAIGWIWEV
     YTYYNFSSVT AYLAVNYLDR FLSQYELPEG RDWMTQLLSV ACLSIAAKME ETVVPQCLDL
     QIGEPRFLFE VETIHRMELL VLTNLNWRMQ AVTPFSYIDY FLRKLNSGNA APRSWLLRSS
     ELILRIAAGT GFLEFRPSEI AAAVAATVAG EATGVVEEDI AEAFTHVDKG RVLQCQEAIQ
     DHHYSMATIN TVQPKPASTR RGSASASSSS VPESPVAVLD AGCLSYKSDD TDAATIASHG
     GGRRKSCFDS SPVTSKKRRK LSR
 
 
维奥蛋白资源库 - 中文蛋白资源 CopyRight © 2010-2024