CCDA1_ORYSJ
ID CCDA1_ORYSJ Reviewed; 367 AA.
AC Q2RAR6; A0A0P0XYL2; B9G9C2; Q0IUQ7;
DT 15-JUN-2010, integrated into UniProtKB/Swiss-Prot.
DT 24-JAN-2006, sequence version 1.
DT 25-MAY-2022, entry version 71.
DE RecName: Full=Cytochrome c-type biogenesis ccda-like chloroplastic protein 1;
DE AltName: Full=Cytochrome b6f biogenesis protein CCDA1;
DE Flags: Precursor;
GN Name=CCDA1; OrderedLocusNames=Os11g0140800, LOC_Os11g04500;
GN ORFNames=OsJ_32910;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RG The rice full-length cDNA consortium;
RT "Oryza sativa full length cDNA.";
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Probably involved in the transfer of reducing equivalents
CC from stroma to thylakoid lumen and required for the biogenesis of the
CC plastid cytochrome b6f complex. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane
CC {ECO:0000250}; Multi-pass membrane protein.
CC -!- SIMILARITY: Belongs to the DsbD family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF27558.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=EEE51628.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR EMBL; DP000010; ABA91416.1; -; Genomic_DNA.
DR EMBL; AP008217; BAF27558.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014967; BAT12612.1; -; Genomic_DNA.
DR EMBL; CM000148; EEE51628.1; ALT_INIT; Genomic_DNA.
DR EMBL; AK242328; BAH01263.1; -; mRNA.
DR RefSeq; XP_015617329.1; XM_015761843.1.
DR AlphaFoldDB; Q2RAR6; -.
DR STRING; 4530.OS11T0140800-01; -.
DR PaxDb; Q2RAR6; -.
DR EnsemblPlants; Os11t0140800-01; Os11t0140800-01; Os11g0140800.
DR GeneID; 4349738; -.
DR Gramene; Os11t0140800-01; Os11t0140800-01; Os11g0140800.
DR KEGG; osa:4349738; -.
DR eggNOG; ENOG502QR2K; Eukaryota.
DR HOGENOM; CLU_053225_0_0_1; -.
DR InParanoid; Q2RAR6; -.
DR OMA; LGCFLWG; -.
DR OrthoDB; 1039451at2759; -.
DR Proteomes; UP000000763; Chromosome 11.
DR Proteomes; UP000007752; Chromosome 11.
DR Proteomes; UP000059680; Chromosome 11.
DR Genevisible; Q2RAR6; OS.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0017004; P:cytochrome complex assembly; IEA:UniProtKB-KW.
DR InterPro; IPR003834; Cyt_c_assmbl_TM_dom.
DR Pfam; PF02683; DsbD; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; Cytochrome c-type biogenesis; Electron transport; Membrane;
KW Plastid; Reference proteome; Thylakoid; Transit peptide; Transmembrane;
KW Transmembrane helix; Transport.
FT TRANSIT 1..68
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 69..367
FT /note="Cytochrome c-type biogenesis ccda-like chloroplastic
FT protein 1"
FT /id="PRO_0000394853"
FT TRANSMEM 76..96
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 102..122
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 148..170
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 190..210
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 220..240
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 273..293
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 299..319
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 336..356
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 24..45
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 24..40
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 367 AA; 37023 MW; F2E412185BF7E962 CRC64;
MLCVAMAARP VSSTTSTCRP CLPAQVSASK PSTSSSPGTG VLVGVPRERG SSVSKAAIRG
ARLEAAARCS LVRQRPMLLA TVAVGSLVAA GAANATEIGD SLLGSSGLAL ADLSVGDWFG
NLLYSAGQQA NEAVQDQLSA LSFTSLAVIF GAGLVTSLSP CTLSVLPLTL GYIGAFGSGK
DRSEVVGNSV AFSLGLATTL AILGVAASFA GKAYGQVGQG LPVAASGLAV IMGLNLLEVI
ELQLPSFFSD YDPRAAAANL PSSVQAYLAG LTFALAASPC STPVLATLLG YVATSRDPIV
GGSLLLTYTT GYVAPLLIAA SFAGALQSLL SFRRYSAWIN PISGAFLLGG GVYTLLDRLF
PATSMVM
