CCDA2_ORYSJ
ID CCDA2_ORYSJ Reviewed; 362 AA.
AC Q2QY07; C7JA67; Q2QY06;
DT 15-JUN-2010, integrated into UniProtKB/Swiss-Prot.
DT 24-JAN-2006, sequence version 1.
DT 03-AUG-2022, entry version 63.
DE RecName: Full=Cytochrome c-type biogenesis ccda-like chloroplastic protein 2;
DE AltName: Full=Cytochrome b6f biogenesis protein CCDA2;
DE Flags: Precursor;
GN Name=CCDA2; OrderedLocusNames=Os12g0137300, LOC_Os12g04270;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
CC -!- FUNCTION: Probably involved in the transfer of reducing equivalents
CC from stroma to thylakoid lumen and required for the biogenesis of the
CC plastid cytochrome b6f complex. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane
CC {ECO:0000250}; Multi-pass membrane protein.
CC -!- SIMILARITY: Belongs to the DsbD family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=ABA95764.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAH95508.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; DP000011; ABA95763.1; -; Genomic_DNA.
DR EMBL; DP000011; ABA95764.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008218; BAH95508.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014968; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_015620194.1; XM_015764708.1.
DR AlphaFoldDB; Q2QY07; -.
DR STRING; 39947.Q2QY07; -.
DR PaxDb; Q2QY07; -.
DR PRIDE; Q2QY07; -.
DR GeneID; 9266150; -.
DR KEGG; osa:9266150; -.
DR InParanoid; Q2QY07; -.
DR OrthoDB; 1039451at2759; -.
DR Proteomes; UP000000763; Chromosome 12.
DR Proteomes; UP000059680; Chromosome 12.
DR Genevisible; Q2QY07; OS.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0017004; P:cytochrome complex assembly; IEA:UniProtKB-KW.
DR InterPro; IPR003834; Cyt_c_assmbl_TM_dom.
DR Pfam; PF02683; DsbD; 1.
PE 3: Inferred from homology;
KW Chloroplast; Cytochrome c-type biogenesis; Electron transport; Membrane;
KW Plastid; Reference proteome; Thylakoid; Transit peptide; Transmembrane;
KW Transmembrane helix; Transport.
FT TRANSIT 1..63
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 64..362
FT /note="Cytochrome c-type biogenesis ccda-like chloroplastic
FT protein 2"
FT /id="PRO_0000394854"
FT TRANSMEM 71..91
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 97..117
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 143..165
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 185..205
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 215..235
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 268..288
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 294..314
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 331..351
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 1..41
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..35
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 362 AA; 36518 MW; 9110ED6E11C45C3F CRC64;
MAARPVSSTT STCRPCRPAQ AAASKPSTSS SPGTGVLVGV PRERGSSVSK AAIRGARLEA
AARCSLVRQR PMLLATVAVG SLVAAGAANA TEIGDSLLGS SGLALADLSI GDWFGNLLYS
AGQQANEAVQ DQLSALSFTS LAVIFGAGLV TSLSPCTLSV LPLTLGYIGA FGSGKDRSEV
VGNSVAFSLG LATTLAILGV AASFAGKAYG QVGQGLPVAA SGLAVIMGLN LLEVIELQLP
SFFSDYDPRA AAANLPSSVQ AYLAGLTFAL AASPCSTPVL ATLLGYVATS RDPIVGGSLL
LTYTTGYVAP LLIAASFAGA LQSLLSFRRY SAWINPISGA FLLGGGVYTL LDRLFPATSM
VM
