ID   CCH11_ORYSJ             Reviewed;         330 AA.
AC   Q10D80; B7ESB2; Q6TUB9; Q84R39; Q9FZN6;
DT   15-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT   22-AUG-2006, sequence version 1.
DT   03-AUG-2022, entry version 108.
DE   RecName: Full=Cyclin-H1-1;
DE            Short=CycH1;1;
DE   AltName: Full=Cyclin-H-1;
DE            Short=CycH-1;
GN   Name=CYCH1-1; Synonyms=CYCH-1;
GN   OrderedLocusNames=Os03g0737600, LOC_Os03g52750;
GN   ORFNames=OsJ_12494 {ECO:0000312|EMBL:EEE59890.1}, OSJNBa0084L17.8,
GN   OSJNBb0016H12.25;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, TISSUE SPECIFICITY, DEVELOPMENTAL
RP   STAGE, INDUCTION, AND INTERACTION WITH CDKD-1/CAK-R2.
RX   PubMed=11029700; DOI=10.1046/j.1365-313x.2000.00846.x;
RA   Yamaguchi M., Fabian T., Sauter M., Bhalerao R.P., Schrader J.,
RA   Sandberg G., Umeda M., Uchimiya H.;
RT   "Activation of CDK-activating kinase is dependent on interaction with H-
RT   type cyclins in plants.";
RL   Plant J. 24:11-20(2000).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX   PubMed=14530400; DOI=10.1073/pnas.1434476100;
RA   Ilic K., SanMiguel P.J., Bennetzen J.L.;
RT   "A complex history of rearrangement in an orthologous region of the maize,
RT   sorghum, and rice genomes.";
RL   Proc. Natl. Acad. Sci. U.S.A. 100:12265-12270(2003).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16109971; DOI=10.1101/gr.3869505;
RG   The rice chromosome 3 sequencing consortium;
RA   Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA   Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA   Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA   Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA   Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA   Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA   Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA   Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA   Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA   Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA   O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA   Jin W., Lee H.R., Jiang J., Jackson S.;
RT   "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT   and diverged grass species.";
RL   Genome Res. 15:1284-1291(2005).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [5]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [6]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [7]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [8]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [9]
RP   FUNCTION.
RX   PubMed=12799469; DOI=10.1073/pnas.1332637100;
RA   Yamaguchi M., Kato H., Yoshida S., Yamamura S., Uchimiya H., Umeda M.;
RT   "Control of in vitro organogenesis by cyclin-dependent kinase activities in
RT   plants.";
RL   Proc. Natl. Acad. Sci. U.S.A. 100:8019-8023(2003).
RN   [10]
RP   GENE FAMILY, AND NOMENCLATURE.
RX   PubMed=16435118; DOI=10.1007/s00438-005-0093-5;
RA   La H., Li J., Ji Z., Cheng Y., Li X., Jiang S., Venkatesh P.N.,
RA   Ramachandran S.;
RT   "Genome-wide analysis of cyclin family in rice (Oryza sativa L.).";
RL   Mol. Genet. Genomics 275:374-386(2006).
CC   -!- FUNCTION: Involved in cell cycle regulation. May be a regulatory
CC       subunit of CDKD-1/CAK-R2. {ECO:0000269|PubMed:11029700,
CC       ECO:0000269|PubMed:12799469}.
CC   -!- SUBUNIT: Interacts specifically with CDKD-1/CAK-R2.
CC       {ECO:0000269|PubMed:11029700}.
CC   -!- TISSUE SPECIFICITY: Expressed in roots, nodes and internodes, and at
CC       lower levels in shoots and leaves. Expressed in the intercalary
CC       meristem of internodes and at lower levels in the elongation zone and
CC       differentiation zone. {ECO:0000269|PubMed:11029700}.
CC   -!- DEVELOPMENTAL STAGE: Expressed in the S and G2 phases.
CC       {ECO:0000269|PubMed:11029700}.
CC   -!- INDUCTION: By submergence in the meristematic zone of internodes.
CC       {ECO:0000269|PubMed:11029700}.
CC   -!- SIMILARITY: Belongs to the cyclin family. Cyclin F subfamily.
CC       {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAP03415.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC       Sequence=AAR07076.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR   EMBL; AB038234; BAB11694.1; -; mRNA.
DR   EMBL; AY387483; AAR07076.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; AC118133; AAP03415.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; DP000009; ABF98764.1; -; Genomic_DNA.
DR   EMBL; AP008209; BAF13117.1; -; Genomic_DNA.
DR   EMBL; AP014959; BAS86279.1; -; Genomic_DNA.
DR   EMBL; CM000140; EEE59890.1; -; Genomic_DNA.
DR   EMBL; AK101854; BAG95259.1; -; mRNA.
DR   EMBL; AK105468; BAG97262.1; -; mRNA.
DR   RefSeq; XP_015628150.1; XM_015772664.1.
DR   AlphaFoldDB; Q10D80; -.
DR   SMR; Q10D80; -.
DR   STRING; 4530.OS03T0737600-01; -.
DR   PaxDb; Q10D80; -.
DR   PRIDE; Q10D80; -.
DR   EnsemblPlants; Os03t0737600-01; Os03t0737600-01; Os03g0737600.
DR   GeneID; 4334040; -.
DR   Gramene; Os03t0737600-01; Os03t0737600-01; Os03g0737600.
DR   KEGG; osa:4334040; -.
DR   eggNOG; KOG2496; Eukaryota.
DR   HOGENOM; CLU_022620_1_1_1; -.
DR   InParanoid; Q10D80; -.
DR   OMA; FRVEQNT; -.
DR   OrthoDB; 1469819at2759; -.
DR   PlantReactome; R-OSA-9640760; G1 phase.
DR   Proteomes; UP000000763; Chromosome 3.
DR   Proteomes; UP000007752; Chromosome 3.
DR   Proteomes; UP000059680; Chromosome 3.
DR   Genevisible; Q10D80; OS.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0070985; C:transcription factor TFIIK complex; IBA:GO_Central.
DR   GO; GO:0016538; F:cyclin-dependent protein serine/threonine kinase regulator activity; IBA:GO_Central.
DR   GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW.
DR   GO; GO:0051301; P:cell division; IEA:UniProtKB-KW.
DR   GO; GO:0070816; P:phosphorylation of RNA polymerase II C-terminal domain; IBA:GO_Central.
DR   GO; GO:0000079; P:regulation of cyclin-dependent protein serine/threonine kinase activity; IBA:GO_Central.
DR   GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR   CDD; cd00043; CYCLIN; 1.
DR   InterPro; IPR013763; Cyclin-like.
DR   InterPro; IPR036915; Cyclin-like_sf.
DR   InterPro; IPR043198; Cyclin/Ssn8.
DR   InterPro; IPR031658; Cyclin_C_2.
DR   InterPro; IPR006671; Cyclin_N.
DR   PANTHER; PTHR10026; PTHR10026; 1.
DR   Pfam; PF16899; Cyclin_C_2; 1.
DR   Pfam; PF00134; Cyclin_N; 1.
DR   SMART; SM00385; CYCLIN; 1.
DR   SUPFAM; SSF47954; SSF47954; 2.
PE   1: Evidence at protein level;
KW   Cell cycle; Cell division; Cyclin; Reference proteome.
FT   CHAIN           1..330
FT                   /note="Cyclin-H1-1"
FT                   /id="PRO_0000287050"
FT   REGION          297..330
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   330 AA;  38255 MW;  795611030F074FA6 CRC64;
     MADFRTSTHR ERWIFQTNDL MDRWGAANQR ATETLVQYGT TRLKVDPVDG SLSYPEPAPD
     HVVGSSGVKP LSCEEERLMR VFYEQKIQEV CSAFKFPHKI QATAIIYFKR FYLQWSVMEH
     HPKHIMLTCI YSSCKVEENH VSAEELGKGI QQDHQIILNN EMIVLKSLDF DLIVYAPYRS
     IEGFVDDMED FCRAGNGEHQ RLQDLRQTAI SQVDKMMLTD APLLYTPGQL ALAALHKSND
     MHKILNFERY LESVFSRQHS DCPIEQFVGS INMINYLVEQ LKIPTPKDMR HIDRKLKHCL
     DPSSQDEHKK KEKKSKHKSK RAANEAQLDS