ID   CCM1_DEBHA              Reviewed;         787 AA.
AC   Q6BZ28;
DT   30-NOV-2010, integrated into UniProtKB/Swiss-Prot.
DT   04-NOV-2008, sequence version 2.
DT   25-MAY-2022, entry version 83.
DE   RecName: Full=Mitochondrial group I intron splicing factor CCM1;
DE   Flags: Precursor;
GN   Name=CCM1; OrderedLocusNames=DEHA2A05060g;
OS   Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990
OS   / NBRC 0083 / IGC 2968) (Yeast) (Torulaspora hansenii).
OC   Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes;
OC   Saccharomycetales; Debaryomycetaceae; Debaryomyces.
OX   NCBI_TaxID=284592;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968;
RX   PubMed=15229592; DOI=10.1038/nature02579;
RA   Dujon B., Sherman D., Fischer G., Durrens P., Casaregola S., Lafontaine I.,
RA   de Montigny J., Marck C., Neuveglise C., Talla E., Goffard N., Frangeul L.,
RA   Aigle M., Anthouard V., Babour A., Barbe V., Barnay S., Blanchin S.,
RA   Beckerich J.-M., Beyne E., Bleykasten C., Boisrame A., Boyer J.,
RA   Cattolico L., Confanioleri F., de Daruvar A., Despons L., Fabre E.,
RA   Fairhead C., Ferry-Dumazet H., Groppi A., Hantraye F., Hennequin C.,
RA   Jauniaux N., Joyet P., Kachouri R., Kerrest A., Koszul R., Lemaire M.,
RA   Lesur I., Ma L., Muller H., Nicaud J.-M., Nikolski M., Oztas S.,
RA   Ozier-Kalogeropoulos O., Pellenz S., Potier S., Richard G.-F.,
RA   Straub M.-L., Suleau A., Swennen D., Tekaia F., Wesolowski-Louvel M.,
RA   Westhof E., Wirth B., Zeniou-Meyer M., Zivanovic Y., Bolotin-Fukuhara M.,
RA   Thierry A., Bouchier C., Caudron B., Scarpelli C., Gaillardin C.,
RA   Weissenbach J., Wincker P., Souciet J.-L.;
RT   "Genome evolution in yeasts.";
RL   Nature 430:35-44(2004).
CC   -!- FUNCTION: RNA-binding protein involved in the specific removal of group
CC       I introns in mitochondrial encoded transcripts. Maintains the stability
CC       of the small subunit mitochondrial 15S rRNA and thus the expression of
CC       the mitochondrial genome (By similarity). {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000250}.
CC   -!- SIMILARITY: Belongs to the CCM1 family. {ECO:0000305}.
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DR   EMBL; CR382133; CAG84496.2; -; Genomic_DNA.
DR   RefSeq; XP_456541.2; XM_456541.2.
DR   AlphaFoldDB; Q6BZ28; -.
DR   SMR; Q6BZ28; -.
DR   STRING; 4959.XP_456541.2; -.
DR   PRIDE; Q6BZ28; -.
DR   EnsemblFungi; CAG84496; CAG84496; DEHA2A05060g.
DR   GeneID; 2899920; -.
DR   KEGG; dha:DEHA2A05060g; -.
DR   VEuPathDB; FungiDB:DEHA2A05060g; -.
DR   eggNOG; ENOG502QUX2; Eukaryota.
DR   HOGENOM; CLU_019745_0_0_1; -.
DR   InParanoid; Q6BZ28; -.
DR   OMA; RALYYKY; -.
DR   OrthoDB; 531312at2759; -.
DR   Proteomes; UP000000599; Chromosome A.
DR   GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR   GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR   GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
DR   Gene3D; 1.25.40.10; -; 2.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF01535; PPR; 1.
DR   Pfam; PF13041; PPR_2; 1.
DR   TIGRFAMs; TIGR00756; PPR; 2.
DR   PROSITE; PS51375; PPR; 3.
PE   3: Inferred from homology;
KW   Mitochondrion; mRNA processing; mRNA splicing; Reference proteome; Repeat;
KW   Transit peptide.
FT   TRANSIT         1..23
FT                   /note="Mitochondrion"
FT                   /evidence="ECO:0000255"
FT   CHAIN           24..787
FT                   /note="Mitochondrial group I intron splicing factor CCM1"
FT                   /id="PRO_0000402262"
FT   REPEAT          286..320
FT                   /note="PPR 1"
FT   REPEAT          321..356
FT                   /note="PPR 2"
FT   REPEAT          359..393
FT                   /note="PPR 3"
FT   REGION          38..58
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   787 AA;  89735 MW;  ACF6F9611E451CAE CRC64;
     MMLRLSVKKR CMSRTIPRIS GLQGSIYSSR NIFVVRSQKG KPTLRKSKGS NDGGAVNNKE
     KLSEWVDSDF ERKMKQQEVE YERRLKELKS LTASVARIIK KKEDIEKLQE IPMPSEVNRD
     AEKIYGSLEV GKEKLASLPE NSPSLSGIEK QPEPFNASNH SLITPAIDMP ESITKRLGLA
     IKFLVSKTNI NWTMVLQQLK EGGGFQGLPE RDIRMFIYSI PKEQISHLIP VLEQLLEEGN
     VKKSSKIINV FIAGLSHGGY LSDESIAQIE QYCNHITKIN KKGKLSRETY ELMIQAYGKN
     NNLEKINMCL SEMKQNKLEP SQKTFSNILS TCVYKANDHK QAVEIFDSMK FLSQKTKPDT
     RAYQDIIVSY VNNDNIEKAL DLYREMITEK IEINQRIMVA LARGCTSRPE LRFKAWDFIF
     DIYNNNWEPT LNTFEYMLYL SAKDGDVALS RAFYSKLNES NAITPRSFSF LLLAYSKSQV
     SQPGQSIELP PITFHEKGRN FRRNILSDVN LFPASAQNGI PFLPVLDLTS KEEIMAESSA
     MWAHTLMFNP SFVNTDCANT FLNIAAVMGR LNDFIDRYDS STFLDRTGLS NDTRIIIEEL
     PDSISSNTDI SQTDGESVSS VQSKFDEMSI TKSPLLKDVG SNIGLGNRKI SRTSLSYVIA
     LKAAARFKNY KFAQRIWSER GTFRKTSNFK DLSRSTKDAL DFQFANAMVS CLTKMNLLDD
     ALAILLSTEY QFKWTWKELR ELYQAASDID HSDACKSIRG IAKRAQINYE GKIRRKDFKR
     YVMERGY