ID   CCM1_SCHJY              Reviewed;         677 AA.
AC   B6K1V7;
DT   30-NOV-2010, integrated into UniProtKB/Swiss-Prot.
DT   16-DEC-2008, sequence version 1.
DT   03-AUG-2022, entry version 40.
DE   RecName: Full=Mitochondrial group I intron splicing factor dmr1;
DE   Flags: Precursor;
GN   Name=dmr1; ORFNames=SJAG_02217;
OS   Schizosaccharomyces japonicus (strain yFS275 / FY16936) (Fission yeast).
OC   Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina;
OC   Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae;
OC   Schizosaccharomyces.
OX   NCBI_TaxID=402676;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=yFS275 / FY16936;
RX   PubMed=21511999; DOI=10.1126/science.1203357;
RA   Rhind N., Chen Z., Yassour M., Thompson D.A., Haas B.J., Habib N.,
RA   Wapinski I., Roy S., Lin M.F., Heiman D.I., Young S.K., Furuya K., Guo Y.,
RA   Pidoux A., Chen H.M., Robbertse B., Goldberg J.M., Aoki K., Bayne E.H.,
RA   Berlin A.M., Desjardins C.A., Dobbs E., Dukaj L., Fan L., FitzGerald M.G.,
RA   French C., Gujja S., Hansen K., Keifenheim D., Levin J.Z., Mosher R.A.,
RA   Mueller C.A., Pfiffner J., Priest M., Russ C., Smialowska A., Swoboda P.,
RA   Sykes S.M., Vaughn M., Vengrova S., Yoder R., Zeng Q., Allshire R.,
RA   Baulcombe D., Birren B.W., Brown W., Ekwall K., Kellis M., Leatherwood J.,
RA   Levin H., Margalit H., Martienssen R., Nieduszynski C.A., Spatafora J.W.,
RA   Friedman N., Dalgaard J.Z., Baumann P., Niki H., Regev A., Nusbaum C.;
RT   "Comparative functional genomics of the fission yeasts.";
RL   Science 332:930-936(2011).
CC   -!- FUNCTION: RNA-binding protein involved in the specific removal of group
CC       I introns in mitochondrial encoded transcripts. Maintains the stability
CC       of the small subunit mitochondrial 15S rRNA and thus the expression of
CC       the mitochondrial genome (By similarity). {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000250}.
CC   -!- SIMILARITY: Belongs to the CCM1 family. {ECO:0000305}.
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DR   EMBL; KE651166; EEB07138.1; -; Genomic_DNA.
DR   RefSeq; XP_002173431.1; XM_002173395.2.
DR   AlphaFoldDB; B6K1V7; -.
DR   SMR; B6K1V7; -.
DR   STRING; 4897.EEB07138; -.
DR   PRIDE; B6K1V7; -.
DR   EnsemblFungi; EEB07138; EEB07138; SJAG_02217.
DR   GeneID; 7050194; -.
DR   VEuPathDB; FungiDB:SJAG_02217; -.
DR   eggNOG; ENOG502QUX2; Eukaryota.
DR   HOGENOM; CLU_416844_0_0_1; -.
DR   OMA; WHELCYQ; -.
DR   OrthoDB; 531312at2759; -.
DR   Proteomes; UP000001744; Unassembled WGS sequence.
DR   GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR   GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR   GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
DR   Gene3D; 1.25.40.10; -; 2.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF01535; PPR; 1.
DR   Pfam; PF13041; PPR_2; 1.
DR   TIGRFAMs; TIGR00756; PPR; 2.
DR   PROSITE; PS51375; PPR; 6.
PE   3: Inferred from homology;
KW   Mitochondrion; mRNA processing; mRNA splicing; Reference proteome; Repeat;
KW   Transit peptide.
FT   TRANSIT         1..43
FT                   /note="Mitochondrion"
FT                   /evidence="ECO:0000255"
FT   CHAIN           44..677
FT                   /note="Mitochondrial group I intron splicing factor dmr1"
FT                   /id="PRO_0000402268"
FT   REPEAT          210..244
FT                   /note="PPR 1"
FT   REPEAT          245..279
FT                   /note="PPR 2"
FT   REPEAT          280..314
FT                   /note="PPR 3"
FT   REPEAT          317..351
FT                   /note="PPR 4"
FT   REPEAT          355..390
FT                   /note="PPR 5"
FT   REPEAT          569..604
FT                   /note="PPR 6"
SQ   SEQUENCE   677 AA;  78480 MW;  8B6B8D1EB8FD0D8D CRC64;
     MFTEICGKLR TCIYKKVAFS RPLGCNLRQL PVFRDFHNSV SCLRENDKAL DELNATILRL
     QRRIDASKSI SLQQKQTQEF PRNEKLLSFL LDNTLRSNVS DKETHSVPPK SKSVLPSEDN
     ILVQRLGVPE TSFNKYFQLE PTAESISHKS VLAPEVWKSR LDNLFRYSVP FEKCNLNQVI
     ELVTHLPSSF RASYAKNILD CLKQVCLTPS VYLLNILLHA SAKHSTLEET LNVYNAYNQF
     QLKPDNYTFV SLIIAYSLHK QIVKAFSLLS EMKRLKIEAN THVFNTYIAI LYHERLYEQA
     WRLFDYMKFK SLQSQPDDKT YSYMISVCTA ERKVEKALNL YQEMQERPIN PLTPSSRTID
     AILRALARYP RYHSKFWSIF EELRAEQWKP GAQTFVAFAQ LFSYGGQVNS LKRWISRIWS
     MSGETPDAKT IELLFQYLFR AYSNVKFNQE PSLEQVPNEK TGDDASISSP SNQLSLKLPF
     LLSSSSGDIT KEELIHEAKE CYHYLQQYHP TVLSVHLRTT YMSIFKNHGC MDEVKEFYAK
     SFRPAKLPSS HVVSNQNETT CNKDLPFRDI HVYACAINGA SVSNDFAFGY AVWLEYLHCK
     SYLPEVLNGD KIEFEITKSM IILFARNQFL HLAVKLLNET KDRHWKWTRR SLGIMHKVAF
     LSQDKPALDL IEEIVLD