CCMH_ORYSJ
ID CCMH_ORYSJ Reviewed; 152 AA.
AC Q6K7S7; A0A0P0VHM5;
DT 29-APR-2015, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 107.
DE RecName: Full=Cytochrome c-type biogenesis CcmH-like mitochondrial protein {ECO:0000305};
DE Short=OsCCMH {ECO:0000305};
GN Name=CCMH {ECO:0000305};
GN OrderedLocusNames=Os02g0275100 {ECO:0000312|EMBL:BAF08453.1},
GN LOC_Os02g17520 {ECO:0000305};
GN ORFNames=OsJ_06229 {ECO:0000312|EMBL:EEE56726.1},
GN P0017G06.11 {ECO:0000312|EMBL:BAD21809.1},
GN P0413A11.41 {ECO:0000312|EMBL:BAD21845.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RG The rice full-length cDNA consortium;
RT "Oryza sativa full length cDNA.";
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Plays a role in mitochondrial cytochrome c maturation.
CC Probable component of a heme lyase complex involved in the reduction of
CC apocytochrome c. {ECO:0000250|UniProtKB:Q9XI46}.
CC -!- SUBCELLULAR LOCATION: Mitochondrion inner membrane
CC {ECO:0000250|UniProtKB:Q9XI46}; Single-pass membrane protein
CC {ECO:0000255}.
CC -!- SIMILARITY: Belongs to the CcmH/CycL/Ccl2/NrfF family. {ECO:0000305}.
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DR EMBL; AP004770; BAD21809.1; -; Genomic_DNA.
DR EMBL; AP004771; BAD21845.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF08453.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS78087.1; -; Genomic_DNA.
DR EMBL; CM000139; EEE56726.1; -; Genomic_DNA.
DR EMBL; AK242385; BAH01276.1; -; mRNA.
DR RefSeq; XP_015625330.1; XM_015769844.1.
DR RefSeq; XP_015625331.1; XM_015769845.1.
DR AlphaFoldDB; Q6K7S7; -.
DR SMR; Q6K7S7; -.
DR STRING; 4530.OS02T0275100-01; -.
DR PaxDb; Q6K7S7; -.
DR PRIDE; Q6K7S7; -.
DR EnsemblPlants; Os02t0275100-01; Os02t0275100-01; Os02g0275100.
DR GeneID; 4329000; -.
DR Gramene; Os02t0275100-01; Os02t0275100-01; Os02g0275100.
DR KEGG; osa:4329000; -.
DR eggNOG; ENOG502RXFW; Eukaryota.
DR HOGENOM; CLU_107187_1_0_1; -.
DR InParanoid; Q6K7S7; -.
DR OMA; WAYNRHR; -.
DR OrthoDB; 1334229at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR Genevisible; Q6K7S7; OS.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005743; C:mitochondrial inner membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0032991; C:protein-containing complex; IEA:EnsemblPlants.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0016491; F:oxidoreductase activity; IEA:EnsemblPlants.
DR GO; GO:0017004; P:cytochrome complex assembly; IEA:UniProtKB-KW.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants.
DR Gene3D; 1.10.8.640; -; 1.
DR InterPro; IPR005616; CcmH/CycL/Ccl2/NrfF.
DR InterPro; IPR038297; CcmH/CycL/NrfF/Ccl2_sf.
DR Pfam; PF03918; CcmH; 1.
PE 2: Evidence at transcript level;
KW Cytochrome c-type biogenesis; Heme; Iron; Membrane; Metal-binding;
KW Mitochondrion; Mitochondrion inner membrane; Reference proteome;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..152
FT /note="Cytochrome c-type biogenesis CcmH-like mitochondrial
FT protein"
FT /id="PRO_0000432847"
FT TOPO_DOM 1..83
FT /note="Mitochondrial intermembrane"
FT /evidence="ECO:0000250|UniProtKB:Q9XI46"
FT TRANSMEM 84..104
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 105..152
FT /note="Mitochondrial matrix"
FT /evidence="ECO:0000250|UniProtKB:Q9XI46"
FT BINDING 26
FT /ligand="heme"
FT /ligand_id="ChEBI:CHEBI:30413"
FT /note="covalent"
FT /evidence="ECO:0000250|UniProtKB:Q9XI46"
FT BINDING 29
FT /ligand="heme"
FT /ligand_id="ChEBI:CHEBI:30413"
FT /note="covalent"
FT /evidence="ECO:0000250|UniProtKB:Q9XI46"
SQ SEQUENCE 152 AA; 17278 MW; BDAF91EA713DBF81 CRC64;
MATEEDVKQR QIIESRARNI SHNVRCTECG SQSIEDSQAD IAILLRKLIR DEIKSGKSDK
EIYKKLQADY GETILYTPKF DLQTAAIWLS PVIVGGVAAG VWAYQKHRQR TNVHIMALNL
VRGVPLTPRE KETMLDVLTP PPPANKWWWP GK
