CCS1_ORYSJ
ID CCS1_ORYSJ Reviewed; 564 AA.
AC Q75KA9; A0A0P0W436; A3AN26;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=Cytochrome c biogenesis protein CCS1, chloroplastic;
DE AltName: Full=C-type cytochrome synthesis protein 1;
DE Flags: Precursor;
GN Name=CCS1; OrderedLocusNames=Os03g0769600, LOC_Os03g55970;
GN ORFNames=OsJ_012198, OSJNBa0072F13.17;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Required during biogenesis of c-type cytochromes (cytochrome
CC c6 and cytochrome f) at the step of heme attachment. {ECO:0000250}.
CC -!- SUBUNIT: May interact with ccsA. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane
CC {ECO:0000250}; Multi-pass membrane protein {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the Ccs1/CcsB family. {ECO:0000305}.
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DR EMBL; AC107207; AAR87329.1; -; Genomic_DNA.
DR EMBL; AC133450; AAT85058.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF99077.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF13311.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS86580.1; -; Genomic_DNA.
DR EMBL; CM000140; EAZ28715.1; -; Genomic_DNA.
DR EMBL; AK100054; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015627925.1; XM_015772439.1.
DR AlphaFoldDB; Q75KA9; -.
DR STRING; 4530.OS03T0769600-01; -.
DR PaxDb; Q75KA9; -.
DR PRIDE; Q75KA9; -.
DR EnsemblPlants; Os03t0769600-01; Os03t0769600-01; Os03g0769600.
DR GeneID; 4334251; -.
DR Gramene; Os03t0769600-01; Os03t0769600-01; Os03g0769600.
DR KEGG; osa:4334251; -.
DR eggNOG; ENOG502QRFF; Eukaryota.
DR HOGENOM; CLU_034630_0_0_1; -.
DR InParanoid; Q75KA9; -.
DR OMA; RFWIDYT; -.
DR OrthoDB; 509749at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q75KA9; OS.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0017004; P:cytochrome complex assembly; IEA:UniProtKB-KW.
DR HAMAP; MF_01392; CytC_Ccs1; 1.
DR InterPro; IPR023494; Cyt_c_bgen_Ccs1/CcsB/ResB.
DR InterPro; IPR007816; ResB-like_domain.
DR PANTHER; PTHR31566; PTHR31566; 1.
DR Pfam; PF05140; ResB; 2.
PE 2: Evidence at transcript level;
KW Chloroplast; Cytochrome c-type biogenesis; Membrane; Plastid;
KW Reference proteome; Thylakoid; Transit peptide; Transmembrane;
KW Transmembrane helix.
FT TRANSIT 1..38
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT TRANSIT 39..?
FT /note="Thylakoid"
FT /evidence="ECO:0000255"
FT CHAIN ?..564
FT /note="Cytochrome c biogenesis protein CCS1, chloroplastic"
FT /id="PRO_0000363639"
FT TRANSMEM 125..145
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 184..204
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 270..290
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 1..36
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 76..99
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 96
FT /note="E -> K (in Ref. 5; EAZ28715)"
FT /evidence="ECO:0000305"
FT CONFLICT 220
FT /note="H -> R (in Ref. 6; AK100054)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 564 AA; 61003 MW; A69480F18885B1E8 CRC64;
MPSPTCYLLL NPTASRSHHR PRLPLPAAAP PRRRVHVSCD ARRTGGGGGG GGVKREAIPA
GTGKAKKQVV FFDAAPPVSQ RGGGGGGEGE GEGEGEGKVA RRKENAALGL VRRLTKRTLS
LLSNLPLAIS EMFAIAALMA LGTVIDQGEA PSYYFEKFPE DNPVFGFITW RWILTPGFDH
MFSSPVFLGL LALLAASLMA CTYTTQIPIV KVARRWSFMH SAGSIRKQEF AESLPRASIQ
DLGVILMGYG YEVFTKGPSL YAFKGLAGRF APIGVHIAMI FIMAGATLSA TGSFKGSVDV
PQGLNFVIGD VMKPKGVLSF VPDVFNTEVH VNRFYMEYYD SGEVSQFYSD LSLFDLDGKE
VMRKTIKVND PLRYGGVTIY QTDWGFSALQ VKKNGEGPFN LAMAPLKLNG DKKLFGTLLP
LENSGSSNVK GISMLARDLQ SIVLYDQEGK FVGVRRPSSK LPIEIDGNEI VIEDAIGSTG
LDLKTDPGIP IVYAGFGALM LTTCISYLSH SQIWALQDGS TVVIGGKTNR AKLEFSEEMN
RLLDKVPELI SVNEKKIDSK QSAT
