CCSDS_ORYSJ
ID CCSDS_ORYSJ Reviewed; 469 AA.
AC Q10PQ9; A0A0N7KGV2; B7EN10; Q8H7S1; Q8H7S2;
DT 15-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT 22-AUG-2006, sequence version 1.
DT 03-AUG-2022, entry version 100.
DE RecName: Full=Cyclin-SDS-like {ECO:0000305};
DE AltName: Full=Protein SOLO DANCERS-like {ECO:0000305};
DE Short=OsSDS {ECO:0000303|PubMed:19417775};
GN Name=SDS {ECO:0000303|PubMed:19417775};
GN OrderedLocusNames=Os03g0225200 {ECO:0000312|EMBL:BAF11345.1},
GN LOC_Os03g12414 {ECO:0000312|EMBL:ABF94734.1};
GN ORFNames=OsJ_09984 {ECO:0000312|EMBL:EEE58625.1},
GN OSJNBa0081P02.10 {ECO:0000312|EMBL:AAN52745.1},
GN OSJNBa0081P02.9 {ECO:0000312|EMBL:AAN52745.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16435118; DOI=10.1007/s00438-005-0093-5;
RA La H., Li J., Ji Z., Cheng Y., Li X., Jiang S., Venkatesh P.N.,
RA Ramachandran S.;
RT "Genome-wide analysis of cyclin family in rice (Oryza sativa L.).";
RL Mol. Genet. Genomics 275:374-386(2006).
RN [8]
RP FUNCTION.
RX PubMed=19417775; DOI=10.1038/cr.2009.52;
RA Chang L., Ma H., Xue H.W.;
RT "Functional conservation of the meiotic genes SDS and RCK in male meiosis
RT in the monocot rice.";
RL Cell Res. 19:768-782(2009).
CC -!- FUNCTION: Meiosis-specific cyclin. Required for normal homolog synapsis
CC and recombination in early to mid-prophase 1.
CC {ECO:0000269|PubMed:19417775}.
CC -!- SIMILARITY: Belongs to the cyclin family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAN52744.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=AAN52745.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC107226; AAN52744.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AC107226; AAN52745.1; ALT_SEQ; Genomic_DNA.
DR EMBL; DP000009; ABF94734.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF11345.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS83049.1; -; Genomic_DNA.
DR EMBL; CM000140; EEE58625.1; -; Genomic_DNA.
DR EMBL; AK074008; BAG93757.1; -; mRNA.
DR RefSeq; XP_015628868.1; XM_015773382.1.
DR AlphaFoldDB; Q10PQ9; -.
DR SMR; Q10PQ9; -.
DR STRING; 4530.OS03T0225200-01; -.
DR PaxDb; Q10PQ9; -.
DR PRIDE; Q10PQ9; -.
DR EnsemblPlants; Os03t0225200-01; Os03t0225200-01; Os03g0225200.
DR GeneID; 4332116; -.
DR Gramene; Os03t0225200-01; Os03t0225200-01; Os03g0225200.
DR KEGG; osa:4332116; -.
DR eggNOG; KOG0653; Eukaryota.
DR InParanoid; Q10PQ9; -.
DR OMA; YVKGSRN; -.
DR OrthoDB; 981966at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR ExpressionAtlas; Q10PQ9; baseline and differential.
DR Genevisible; Q10PQ9; OS.
DR GO; GO:0000307; C:cyclin-dependent protein kinase holoenzyme complex; IBA:GO_Central.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0016538; F:cyclin-dependent protein serine/threonine kinase regulator activity; IBA:GO_Central.
DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW.
DR GO; GO:0007129; P:homologous chromosome pairing at meiosis; IMP:UniProtKB.
DR GO; GO:0045143; P:homologous chromosome segregation; IMP:UniProtKB.
DR GO; GO:0044772; P:mitotic cell cycle phase transition; IBA:GO_Central.
DR GO; GO:0000079; P:regulation of cyclin-dependent protein serine/threonine kinase activity; IBA:GO_Central.
DR CDD; cd00043; CYCLIN; 1.
DR InterPro; IPR039361; Cyclin.
DR InterPro; IPR013763; Cyclin-like.
DR InterPro; IPR036915; Cyclin-like_sf.
DR InterPro; IPR004367; Cyclin_C-dom.
DR InterPro; IPR006671; Cyclin_N.
DR PANTHER; PTHR10177; PTHR10177; 1.
DR Pfam; PF02984; Cyclin_C; 1.
DR Pfam; PF00134; Cyclin_N; 1.
DR PIRSF; PIRSF001771; Cyclin_A_B_D_E; 1.
DR SMART; SM00385; CYCLIN; 2.
DR SUPFAM; SSF47954; SSF47954; 2.
DR PROSITE; PS00292; CYCLINS; 1.
PE 2: Evidence at transcript level;
KW Cell cycle; Cell division; Cyclin; Meiosis; Reference proteome.
FT CHAIN 1..469
FT /note="Cyclin-SDS-like"
FT /id="PRO_0000287063"
FT REGION 1..31
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 69..98
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 146..168
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 469 AA; 51879 MW; 1EF3A2844B13BA7A CRC64;
MPPTMLASVP TRPRSHPFRR RRGAAAAAPP LLPDQIAAAA AAAAKRPAES STSASSCFHS
EVISATSTTC PTSLAAAQRP EKRPRYQDVD EEQPAASECS EIIGGARPRA AEVEVSESSC
LASVLESYLA CPEQLANDAE TTAYSSARED LTLSETEEEE EEEEVRSGPC ICTDCSFSPL
HESSSSSDDD NAVPSPTFSL FLALAEQFVP FTHPKTPTAT DVALQAGEGK RFEDLDNEVS
YERFRRRERR GVVARDYIEV YSSMLGSYGR AVVEQRVVMV NWIMEHSQAM KLQPETVFMG
IGLMDRFLTR GYVKGSRNLQ LLGIACTTLA TRIEENQPYN CILQKAFKVG INTYSRSEVV
AMEWLVQEVL DFQCFVTTTH HFLWFYLKAA NADDRVEDLA KYLALLSLLD HKHLSFWPST
VAAAVVALAC LATNNESSCH LVMETHMRTK NDDLPECLMS LEWLTNYAS
