CCT11_ORYSJ
ID CCT11_ORYSJ Reviewed; 446 AA.
AC Q0E474; A0A0P0VEE4; Q6Z6I8;
DT 15-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT 15-MAY-2007, sequence version 2.
DT 03-AUG-2022, entry version 96.
DE RecName: Full=Cyclin-T1-1;
DE Short=CycT1;1;
GN Name=CYCT1-1; OrderedLocusNames=Os02g0133000, LOC_Os02g04010;
GN ORFNames=OsJ_005122, P0030G11.11;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16435118; DOI=10.1007/s00438-005-0093-5;
RA La H., Li J., Ji Z., Cheng Y., Li X., Jiang S., Venkatesh P.N.,
RA Ramachandran S.;
RT "Genome-wide analysis of cyclin family in rice (Oryza sativa L.).";
RL Mol. Genet. Genomics 275:374-386(2006).
CC -!- SIMILARITY: Belongs to the cyclin family. Cyclin T subfamily.
CC {ECO:0000305}.
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DR EMBL; AP004997; BAD07997.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF07714.2; -; Genomic_DNA.
DR EMBL; AP014958; BAS76837.1; -; Genomic_DNA.
DR EMBL; CM000139; EAZ21639.1; -; Genomic_DNA.
DR RefSeq; XP_015627068.1; XM_015771582.1.
DR AlphaFoldDB; Q0E474; -.
DR SMR; Q0E474; -.
DR STRING; 4530.OS02T0133000-00; -.
DR PaxDb; Q0E474; -.
DR PRIDE; Q0E474; -.
DR EnsemblPlants; Os02t0133000-00; Os02t0133000-00; Os02g0133000.
DR GeneID; 4328207; -.
DR Gramene; Os02t0133000-00; Os02t0133000-00; Os02g0133000.
DR KEGG; osa:4328207; -.
DR eggNOG; KOG0834; Eukaryota.
DR HOGENOM; CLU_022000_8_2_1; -.
DR OMA; VIIVAYE; -.
DR OrthoDB; 1437076at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR GO; GO:0008024; C:cyclin/CDK positive transcription elongation factor complex; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0061575; F:cyclin-dependent protein serine/threonine kinase activator activity; IBA:GO_Central.
DR GO; GO:0016538; F:cyclin-dependent protein serine/threonine kinase regulator activity; IBA:GO_Central.
DR GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW.
DR GO; GO:0051301; P:cell division; IEA:UniProtKB-KW.
DR GO; GO:0032786; P:positive regulation of DNA-templated transcription, elongation; IBA:GO_Central.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00043; CYCLIN; 2.
DR InterPro; IPR013763; Cyclin-like.
DR InterPro; IPR036915; Cyclin-like_sf.
DR InterPro; IPR043198; Cyclin/Ssn8.
DR InterPro; IPR006671; Cyclin_N.
DR PANTHER; PTHR10026; PTHR10026; 2.
DR Pfam; PF00134; Cyclin_N; 1.
DR SMART; SM00385; CYCLIN; 2.
DR SUPFAM; SSF47954; SSF47954; 2.
PE 3: Inferred from homology;
KW Cell cycle; Cell division; Cyclin; Reference proteome.
FT CHAIN 1..446
FT /note="Cyclin-T1-1"
FT /id="PRO_0000287058"
SQ SEQUENCE 446 AA; 50775 MW; 4DFA99B23AA178C0 CRC64;
MGEGAAGSWY VTRDEVERGS PSRRDGVGAA KEAELRATYC SFIRDVGLRL QLPQVTIATA
TLLCHRFYLR QSHAKNEWQT VATVCVFLAS KIEDTPCPLQ RVIIVAYETM YRKDCNAAHR
IYQKEVLEKQ KELILVGETL LLSTIRFDFN IQHPYEPLKL ALKKLGIFQM EVKQVAVNLI
NDAIRTTLVV QFKPHYIAAG SLYLAAKFNN FRLPSDGKVW WHEFDVAPKQ LQAVIQQMTE
LFMGRNPCSM GPAIRPPPTP SLMERQQVIR PPPTPTLMER QPIIRPLPTP TLMENQHITH
SLGAVMRHTH SSIRSLSNNF DREASRSLPL NIPANRKSTV CPARNEGNQS LRMHMGHSNG
SDARFEKQYS RGALKADHVY HVVSGQKDLH VTGIRDLVRQ KRTFHEVGEH PAPIDKSDTK
SWIRKRHGRN VIVFDTKSSS WKKQKL
