CCT12_ORYSJ
ID CCT12_ORYSJ Reviewed; 630 AA.
AC Q6Z7H3; B7F0D1; Q6Z7H4;
DT 15-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT 15-MAY-2007, sequence version 2.
DT 25-MAY-2022, entry version 94.
DE RecName: Full=Cyclin-T1-2;
DE Short=CycT1;2;
GN Name=CYCT1_2; OrderedLocusNames=Os02g0438200, LOC_Os02g24190;
GN ORFNames=OJ1570_H12.4-1, OJ1570_H12.4-2,
GN OsJ_06547 {ECO:0000312|EMBL:EEE56895.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16435118; DOI=10.1007/s00438-005-0093-5;
RA La H., Li J., Ji Z., Cheng Y., Li X., Jiang S., Venkatesh P.N.,
RA Ramachandran S.;
RT "Genome-wide analysis of cyclin family in rice (Oryza sativa L.).";
RL Mol. Genet. Genomics 275:374-386(2006).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q6Z7H3-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q6Z7H3-2; Sequence=VSP_025287, VSP_025288;
CC -!- SIMILARITY: Belongs to the cyclin family. Cyclin T subfamily.
CC {ECO:0000305}.
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DR EMBL; AP004856; BAD17159.1; -; Genomic_DNA.
DR EMBL; AP004856; BAD17160.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF08654.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS78472.1; -; Genomic_DNA.
DR EMBL; CM000139; EEE56895.1; -; Genomic_DNA.
DR EMBL; AK102728; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; AK107537; BAG98078.1; -; mRNA.
DR RefSeq; XP_015626103.1; XM_015770617.1. [Q6Z7H3-1]
DR RefSeq; XP_015626104.1; XM_015770618.1. [Q6Z7H3-1]
DR RefSeq; XP_015626105.1; XM_015770619.1.
DR AlphaFoldDB; Q6Z7H3; -.
DR SMR; Q6Z7H3; -.
DR STRING; 4530.OS02T0438200-01; -.
DR PaxDb; Q6Z7H3; -.
DR PRIDE; Q6Z7H3; -.
DR EnsemblPlants; Os02t0438200-01; Os02t0438200-01; Os02g0438200. [Q6Z7H3-1]
DR GeneID; 4329229; -.
DR Gramene; Os02t0438200-01; Os02t0438200-01; Os02g0438200. [Q6Z7H3-1]
DR KEGG; osa:4329229; -.
DR eggNOG; KOG0834; Eukaryota.
DR HOGENOM; CLU_022000_8_2_1; -.
DR InParanoid; Q6Z7H3; -.
DR OMA; DHLCVER; -.
DR OrthoDB; 1437076at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR ExpressionAtlas; Q6Z7H3; baseline and differential.
DR Genevisible; Q6Z7H3; OS.
DR GO; GO:0008024; C:cyclin/CDK positive transcription elongation factor complex; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0061575; F:cyclin-dependent protein serine/threonine kinase activator activity; IBA:GO_Central.
DR GO; GO:0016538; F:cyclin-dependent protein serine/threonine kinase regulator activity; IBA:GO_Central.
DR GO; GO:0032786; P:positive regulation of DNA-templated transcription, elongation; IBA:GO_Central.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00043; CYCLIN; 2.
DR InterPro; IPR013763; Cyclin-like.
DR InterPro; IPR036915; Cyclin-like_sf.
DR InterPro; IPR043198; Cyclin/Ssn8.
DR InterPro; IPR006671; Cyclin_N.
DR PANTHER; PTHR10026; PTHR10026; 1.
DR Pfam; PF00134; Cyclin_N; 1.
DR SMART; SM00385; CYCLIN; 2.
DR SUPFAM; SSF47954; SSF47954; 2.
PE 2: Evidence at transcript level;
KW Alternative splicing; Cyclin; Reference proteome.
FT CHAIN 1..630
FT /note="Cyclin-T1-2"
FT /id="PRO_0000287059"
FT REGION 288..313
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 410..439
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 288..311
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 1..147
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_025287"
FT VAR_SEQ 148..164
FT /note="RLVLTTVRFDFNIQHPY -> MEQCTGGTQLQLEESTR (in isoform
FT 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_025288"
SQ SEQUENCE 630 AA; 71035 MW; 5B93CCAB67116E93 CRC64;
MDGESQTSKL SCEHMYSWYF TREELEKFSP SRKDGITEIM ESEIRQLYCS FIRDVGIRLK
LPQMTIATAI MFCHRFYLYQ SLAKNGWQTI ATVCIFLASK VEDTPCPLDQ VIRVAYGTMY
RRDPATARRI HQKDVFEKQK ALILTGERLV LTTVRFDFNI QHPYRPLLDA MEKLGISQKE
VKQVAWNFVN DWLKTTLCLQ YKPQYIAAGS LYLAAKFQNV KLPVHGGHVW WHQFDVAPKP
LEAVLQQMRE MVHMKAKLFA HPSPAKQKEV LFEGMLLISN SPDSVLTQSS LSVSSSSPEI
GDPNDHLQVD SSQDIVHIED RSKSYPERNL SNLTADMNNP GKTHNKESLD QALKIKHGGL
ISCNQQIPLD AIAKIDSSTA KCVEQNIGIC CSSSNTFNGK ILNPFSISQR SGDKTKLCSE
GGSSLTDVDS KSTQSVEPPT TICNHTSDSL NVDSLCSDQR LANSTAGTTE KASFVLPVQI
KVDHLCVERK KVDVARIKDL LMKRKRRRER QGRCIPSVDL SEEAWIEREL ESGIVFKKVD
HVVASYDLSD EGWIERELES GIVIGQKNDQ PVSLDGLTED DWIERELESG IIVEPGPAGK
KLKSKLLSEG HEIMNSRWEI NGKSMQNQVT
