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CCU42_ARATH
ID   CCU42_ARATH             Reviewed;         216 AA.
AC   Q9LY16;
DT   15-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2000, sequence version 1.
DT   03-AUG-2022, entry version 118.
DE   RecName: Full=Cyclin-U4-2;
DE            Short=CycU4;2;
DE   AltName: Full=Cyclin-P4.3;
DE            Short=CycP4;3;
GN   Name=CYCU4-2; OrderedLocusNames=At5g07450; ORFNames=T2I1.160;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130714; DOI=10.1038/35048507;
RA   Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA   Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA   Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA   Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA   Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA   O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA   Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA   Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA   Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA   Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA   Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA   Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA   Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA   Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA   Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA   Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA   McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA   Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA   Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA   Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA   Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA   Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA   Bevan M., Fransz P.F.;
RT   "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL   Nature 408:823-826(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11910074; DOI=10.1126/science.1071006;
RA   Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA   Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA   Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA   Shinagawa A., Shinozaki K.;
RT   "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL   Science 296:141-145(2002).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA   Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA   Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA   Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA   Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA   Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA   Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA   Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA   Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA   Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA   Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA   Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
RN   [5]
RP   TISSUE SPECIFICITY, AND INTERACTION WITH CDKA-1.
RX   PubMed=15197472; DOI=10.1007/s00018-004-4057-4;
RA   Torres Acosta J.A., de Almeida Engler J., Raes J., Magyar Z., de Groodt R.,
RA   Inze D., de Veylder L.;
RT   "Molecular characterization of Arabidopsis PHO80-like proteins, a novel
RT   class of CDKA;1-interacting cyclins.";
RL   Cell. Mol. Life Sci. 61:1485-1497(2004).
RN   [6]
RP   GENE FAMILY, AND NOMENCLATURE.
RX   PubMed=15208425; DOI=10.1104/pp.104.040436;
RA   Wang G., Kong H., Sun Y., Zhang X., Zhang W., Altman N., dePamphilis C.W.,
RA   Ma H.;
RT   "Genome-wide analysis of the cyclin family in Arabidopsis and comparative
RT   phylogenetic analysis of plant cyclin-like proteins.";
RL   Plant Physiol. 135:1084-1099(2004).
CC   -!- SUBUNIT: Interacts with CDKA-1. {ECO:0000269|PubMed:15197472}.
CC   -!- TISSUE SPECIFICITY: Expressed in roots, stems and flowers. Expressed in
CC       the shoot apex, leaf primordia and young leaves.
CC       {ECO:0000269|PubMed:15197472}.
CC   -!- SIMILARITY: Belongs to the cyclin family. Cyclin U/P subfamily.
CC       {ECO:0000305}.
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DR   EMBL; AL163912; CAB87934.1; -; Genomic_DNA.
DR   EMBL; CP002688; AED91160.1; -; Genomic_DNA.
DR   EMBL; AK119113; BAC43685.1; -; mRNA.
DR   EMBL; BT005235; AAO63299.1; -; mRNA.
DR   PIR; T49884; T49884.
DR   RefSeq; NP_196362.1; NM_120827.3.
DR   AlphaFoldDB; Q9LY16; -.
DR   SMR; Q9LY16; -.
DR   BioGRID; 15915; 1.
DR   IntAct; Q9LY16; 1.
DR   STRING; 3702.AT5G07450.1; -.
DR   PaxDb; Q9LY16; -.
DR   PRIDE; Q9LY16; -.
DR   DNASU; 830636; -.
DR   EnsemblPlants; AT5G07450.1; AT5G07450.1; AT5G07450.
DR   GeneID; 830636; -.
DR   Gramene; AT5G07450.1; AT5G07450.1; AT5G07450.
DR   KEGG; ath:AT5G07450; -.
DR   Araport; AT5G07450; -.
DR   TAIR; locus:2183394; AT5G07450.
DR   eggNOG; KOG1674; Eukaryota.
DR   HOGENOM; CLU_057371_1_1_1; -.
DR   InParanoid; Q9LY16; -.
DR   OMA; VMRNMYS; -.
DR   OrthoDB; 1153955at2759; -.
DR   PhylomeDB; Q9LY16; -.
DR   PRO; PR:Q9LY16; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   ExpressionAtlas; Q9LY16; baseline and differential.
DR   Genevisible; Q9LY16; AT.
DR   GO; GO:0019901; F:protein kinase binding; IEA:InterPro.
DR   GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW.
DR   GO; GO:0051301; P:cell division; IEA:UniProtKB-KW.
DR   GO; GO:0000079; P:regulation of cyclin-dependent protein serine/threonine kinase activity; IEA:InterPro.
DR   InterPro; IPR036915; Cyclin-like_sf.
DR   InterPro; IPR012389; Cyclin_P/U.
DR   InterPro; IPR013922; Cyclin_PHO80-like.
DR   PANTHER; PTHR15615; PTHR15615; 1.
DR   Pfam; PF08613; Cyclin; 1.
DR   PIRSF; PIRSF027110; PREG; 1.
DR   SUPFAM; SSF47954; SSF47954; 1.
PE   1: Evidence at protein level;
KW   Cell cycle; Cell division; Cyclin; Reference proteome.
FT   CHAIN           1..216
FT                   /note="Cyclin-U4-2"
FT                   /id="PRO_0000287073"
SQ   SEQUENCE   216 AA;  25005 MW;  72D423ED2FAD2966 CRC64;
     MAYQIDQKMI HDQEPMAEIM PNVITAMSSL LQRVSETNDD LSRPFREHKR ISAFNAVTKP
     SISIRSYMER IFKYADCSDS CYIVAYIYLD RFIQKQPLLP IDSSNVHRLI ITSVLVSAKF
     MDDLCYNNAF YAKVGGITTE EMNLLELDFL FGIGFQLNVT ISTYNDYCSS LQREMVMRTM
     YSPLLEPAFL VRSFHKNLLK NLYDEDHRNS QVTSAV
 
 
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