CDIB_DICD3
ID CDIB_DICD3 Reviewed; 558 AA.
AC E0SDG9;
DT 04-MAR-2015, integrated into UniProtKB/Swiss-Prot.
DT 02-NOV-2010, sequence version 1.
DT 03-AUG-2022, entry version 51.
DE RecName: Full=Outer membrane transporter CdiB {ECO:0000305};
DE Flags: Precursor;
GN Name=cdiB; Synonyms=hecB; OrderedLocusNames=Dda3937_04154;
OS Dickeya dadantii (strain 3937) (Erwinia chrysanthemi (strain 3937)).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Pectobacteriaceae; Dickeya.
OX NCBI_TaxID=198628;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=3937;
RX PubMed=21217001; DOI=10.1128/jb.01513-10;
RA Glasner J.D., Yang C.H., Reverchon S., Hugouvieux-Cotte-Pattat N.,
RA Condemine G., Bohin J.P., Van Gijsegem F., Yang S., Franza T., Expert D.,
RA Plunkett G. III, San Francisco M.J., Charkowski A.O., Py B., Bell K.,
RA Rauscher L., Rodriguez-Palenzuela P., Toussaint A., Holeva M.C., He S.Y.,
RA Douet V., Boccara M., Blanco C., Toth I., Anderson B.D., Biehl B.S.,
RA Mau B., Flynn S.M., Barras F., Lindeberg M., Birch P.R., Tsuyumu S.,
RA Shi X., Hibbing M., Yap M.N., Carpentier M., Dassa E., Umehara M.,
RA Kim J.F., Rusch M., Soni P., Mayhew G.F., Fouts D.E., Gill S.R.,
RA Blattner F.R., Keen N.T., Perna N.T.;
RT "Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937.";
RL J. Bacteriol. 193:2076-2077(2011).
RN [2]
RP FUNCTION.
RC STRAIN=3937;
RX PubMed=21085179; DOI=10.1038/nature09490;
RA Aoki S.K., Diner E.J., de Roodenbeke C.T., Burgess B.R., Poole S.J.,
RA Braaten B.A., Jones A.M., Webb J.S., Hayes C.S., Cotter P.A., Low D.A.;
RT "A widespread family of polymorphic contact-dependent toxin delivery
RT systems in bacteria.";
RL Nature 468:439-442(2010).
CC -!- FUNCTION: Probable outer membrane protein component of a toxin-immunity
CC protein module, which functions as a cellular contact-dependent growth
CC inhibition (CDI) system. CDI modules allow bacteria to communicate with
CC and inhibit the growth of closely related neighboring bacteria in a
CC contact-dependent fashion. This protein may be required for secretion
CC and assembly of the CdiA toxin. {ECO:0000305|PubMed:21085179}.
CC -!- FUNCTION: Probable member of a two partner secretion pathway (TPS) in
CC which it mediates the secretion of CdiA. {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Cell outer membrane
CC {ECO:0000305|PubMed:21085179}.
CC -!- MISCELLANEOUS: There are 2 cdiBAI loci in this strain, this is locus 2.
CC {ECO:0000303|PubMed:21085179}.
CC -!- SIMILARITY: Belongs to the TPS (TC 1.B.20) family. {ECO:0000305}.
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DR EMBL; CP002038; ADM98661.1; -; Genomic_DNA.
DR RefSeq; WP_013318107.1; NC_014500.1.
DR AlphaFoldDB; E0SDG9; -.
DR SMR; E0SDG9; -.
DR STRING; 198628.Dda3937_04154; -.
DR PRIDE; E0SDG9; -.
DR EnsemblBacteria; ADM98661; ADM98661; Dda3937_04154.
DR GeneID; 9733896; -.
DR KEGG; ddd:Dda3937_04154; -.
DR PATRIC; fig|198628.6.peg.2441; -.
DR eggNOG; COG2831; Bacteria.
DR HOGENOM; CLU_020581_4_1_6; -.
DR OMA; GLNHTQK; -.
DR OrthoDB; 956274at2; -.
DR BioCyc; DDAD198628:DDA3937_RS11560-MON; -.
DR Proteomes; UP000006859; Chromosome.
DR GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0046930; C:pore complex; IEA:UniProtKB-KW.
DR GO; GO:0015288; F:porin activity; IEA:UniProtKB-KW.
DR GO; GO:0006811; P:ion transport; IEA:UniProtKB-KW.
DR GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
DR InterPro; IPR005565; Hemolysn_activator_HlyB_C.
DR InterPro; IPR013686; Polypept-transport_assoc_ShlB.
DR InterPro; IPR034746; POTRA.
DR InterPro; IPR035251; ShlB_POTRA.
DR InterPro; IPR027282; TPS.
DR Pfam; PF08479; POTRA_2; 1.
DR Pfam; PF17287; POTRA_3; 1.
DR Pfam; PF03865; ShlB; 1.
DR PIRSF; PIRSF029745; FhaC; 1.
DR PROSITE; PS51779; POTRA; 1.
PE 3: Inferred from homology;
KW Cell outer membrane; Coiled coil; Ion transport; Membrane; Porin;
KW Protein transport; Reference proteome; Signal; Transmembrane;
KW Transmembrane beta strand; Transport.
FT SIGNAL 1..25
FT /evidence="ECO:0000255"
FT CHAIN 26..558
FT /note="Outer membrane transporter CdiB"
FT /evidence="ECO:0000255"
FT /id="PRO_0000432082"
FT DOMAIN 76..151
FT /note="POTRA"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01115"
FT COILED 34..62
FT /evidence="ECO:0000255"
SQ SEQUENCE 558 AA; 62320 MW; 8E5B6896C5717BA7 CRC64;
MFVSSRKTGL IVCFSLIGYT ASAFSASLNP AERNETQQRQ SEVIEQSRQQ REALQQLNNI
VQAPLKADNA LQGPCFTLRE IRFNHSTLLG QRDQTALTAG YLNRCNNLEQ INQLMHDVSN
WYIQRGYITS RAFLSEQDLS GGVLQLEILE GRLEKITINN QTERMTRTAF PAREGEILNL
RDIEQGMEQM NRMPSQQVTI EILPGSQPGY SVVNLTREAH LPFTGGVTFD NSGQKSTGEQ
QLNGSLALDN LFGVADQWFI SAGHSSRFAT SHDAESLQAG FSMPYGYWNL GYSYSQSRYR
NTFISRDFPW HSTGDSDTHR LSLSRVVFRN GTMKTAIVGM LSQRTGNNYL NGTLLPSSSR
KLSSVSLGVN HSQKLWGGLA TFNPTYNRGV RWLGAETDTD KSADEPRAEF NKWTLSASYY
YPLTDSITYL GSLYGQYSAR ALYGSEQMTL GGESSVRGFR EQYTSGNRGA YWRNELNWQA
WQLPVLGNVT FMAAVDGGHL YNHKQDDSTA ASLWGGAVGV TVASRWLSQQ VTVGWPISYP
AWLQPDTVVV GYRVGLSF