CDI_ARATH
ID CDI_ARATH Reviewed; 259 AA.
AC Q9XIP8;
DT 04-FEB-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1999, sequence version 1.
DT 25-MAY-2022, entry version 112.
DE RecName: Full=Protein CDI {ECO:0000305};
DE AltName: Full=Protein CADMIUM INDUCED {ECO:0000303|PubMed:22569258};
GN Name=CDI {ECO:0000303|PubMed:22569258};
GN OrderedLocusNames=At1g64980 {ECO:0000312|Araport:AT1G64980};
GN ORFNames=F13O11.28 {ECO:0000312|EMBL:AAD38274.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000312|Proteomes:UP000006548};
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP FUNCTION, DISRUPTION PHENOTYPE, TISSUE SPECIFICITY, AND SUBCELLULAR
RP LOCATION.
RX PubMed=22569258; DOI=10.1016/j.febslet.2012.02.046;
RA Li H.-M., Chen H., Yang Z.-N., Gong J.-M.;
RT "Cdi gene is required for pollen germination and tube growth in
RT Arabidopsis.";
RL FEBS Lett. 586:1027-1031(2012).
CC -!- FUNCTION: Probable nucleotide-diphospho-sugar transferase required for
CC pollen germination and tube growth. {ECO:0000269|PubMed:22569258}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm, cytosol {ECO:0000269|PubMed:22569258}.
CC -!- TISSUE SPECIFICITY: Mostly expressed in pollen grains and pollen tubes,
CC and, at low levels, in seedlings, roots, stems, leaves, flowers and
CC siliques. {ECO:0000269|PubMed:22569258}.
CC -!- DISRUPTION PHENOTYPE: Impaired pollen germination and pollen tube
CC growth thus leading to disrupted male transmission.
CC {ECO:0000269|PubMed:22569258}.
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DR EMBL; AC006193; AAD38274.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE34311.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM59158.1; -; Genomic_DNA.
DR EMBL; BT010414; AAQ62415.1; -; mRNA.
DR EMBL; AK176271; BAD44034.1; -; mRNA.
DR PIR; D96673; D96673.
DR RefSeq; NP_001321542.1; NM_001334184.1.
DR RefSeq; NP_176678.1; NM_105172.4.
DR AlphaFoldDB; Q9XIP8; -.
DR STRING; 3702.AT1G64980.1; -.
DR MetOSite; Q9XIP8; -.
DR PaxDb; Q9XIP8; -.
DR PRIDE; Q9XIP8; -.
DR ProteomicsDB; 223973; -.
DR DNASU; 842806; -.
DR EnsemblPlants; AT1G64980.1; AT1G64980.1; AT1G64980.
DR EnsemblPlants; AT1G64980.3; AT1G64980.3; AT1G64980.
DR GeneID; 842806; -.
DR Gramene; AT1G64980.1; AT1G64980.1; AT1G64980.
DR Gramene; AT1G64980.3; AT1G64980.3; AT1G64980.
DR KEGG; ath:AT1G64980; -.
DR Araport; AT1G64980; -.
DR TAIR; locus:2010776; AT1G64980.
DR eggNOG; ENOG502QPHU; Eukaryota.
DR HOGENOM; CLU_1039721_0_0_1; -.
DR InParanoid; Q9XIP8; -.
DR OMA; FMDCDML; -.
DR PhylomeDB; Q9XIP8; -.
DR PRO; PR:Q9XIP8; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9XIP8; baseline and differential.
DR Genevisible; Q9XIP8; AT.
DR GO; GO:0005829; C:cytosol; IDA:TAIR.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0009846; P:pollen germination; IMP:TAIR.
DR GO; GO:0009860; P:pollen tube growth; IMP:TAIR.
DR Gene3D; 3.90.550.10; -; 1.
DR InterPro; IPR029044; Nucleotide-diphossugar_trans.
DR SUPFAM; SSF53448; SSF53448; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; Cytoplasm; Fertilization; Germination; Reference proteome;
KW Transferase.
FT CHAIN 1..259
FT /note="Protein CDI"
FT /id="PRO_0000431804"
FT COILED 236..259
FT /evidence="ECO:0000255"
SQ SEQUENCE 259 AA; 30216 MW; E9069E4C67525345 CRC64;
MTISNGDVKS ETCNNGSSEK KPFRIFVGYD PREDLAYQVC HHSITKRSSI PVEITPIIQS
DLRKKGLYWR ERGQLESTEF SFSRFLTPHL SDYQGWAMFV DCDFLYLADI KELTDLIDDK
YAIMCVQHDY TPKETTKMDG AVQTVYPRKN WSSMVLYNCG HPKNKTLSPE IVNTQTGAFL
HRFQWLEDEE IGSIPFVWNF LEGHNRVVEK DPTTQPKAVH YTRGGPWFDA WKDCEFADLW
LNEMEEYNKE NKKEADNAK
