CDPF1_DANRE
ID CDPF1_DANRE Reviewed; 87 AA.
AC Q5RGZ1; Q08CV5;
DT 10-JUN-2008, integrated into UniProtKB/Swiss-Prot.
DT 21-DEC-2004, sequence version 1.
DT 03-AUG-2022, entry version 73.
DE RecName: Full=Cysteine-rich DPF motif domain-containing protein 1;
GN Name=cdpf1; ORFNames=si:ch211-239e6.4, zgc:136265;
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Danionidae; Danioninae; Danio.
OX NCBI_TaxID=7955;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen;
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M.,
RA Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I.,
RA Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.,
RA White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y.,
RA Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B.,
RA Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S.,
RA Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S.,
RA Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N.,
RA Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J.,
RA Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J.,
RA Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D.,
RA McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S.,
RA Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E.,
RA Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A.,
RA Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P.,
RA Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C.,
RA Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C.,
RA Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M.,
RA Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C., Raddatz G.,
RA Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F.,
RA Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M.,
RA Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M.,
RA de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C.,
RA Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the human
RT genome.";
RL Nature 496:498-503(2013).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Skin, and Testis;
RG NIH - Zebrafish Gene Collection (ZGC) project;
RL Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the CDPF1 family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAI24073.1; Type=Erroneous termination; Note=Extended C-terminus.; Evidence={ECO:0000305};
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DR EMBL; BX649425; CAI11870.1; -; Genomic_DNA.
DR EMBL; BC115061; AAI15062.1; -; mRNA.
DR EMBL; BC124072; AAI24073.1; ALT_SEQ; mRNA.
DR RefSeq; NP_001070230.2; NM_001076762.2.
DR AlphaFoldDB; Q5RGZ1; -.
DR STRING; 7955.ENSDARP00000114819; -.
DR PaxDb; Q5RGZ1; -.
DR Ensembl; ENSDART00000137798; ENSDARP00000114819; ENSDARG00000095705.
DR Ensembl; ENSDART00000184288; ENSDARP00000145478; ENSDARG00000095705.
DR GeneID; 563220; -.
DR KEGG; dre:563220; -.
DR CTD; 150383; -.
DR ZFIN; ZDB-GENE-041210-170; cdpf1.
DR eggNOG; KOG4543; Eukaryota.
DR GeneTree; ENSGT00390000007925; -.
DR HOGENOM; CLU_169770_0_0_1; -.
DR InParanoid; Q5RGZ1; -.
DR PhylomeDB; Q5RGZ1; -.
DR TreeFam; TF313933; -.
DR PRO; PR:Q5RGZ1; -.
DR Proteomes; UP000000437; Genome assembly.
DR Proteomes; UP000814640; Chromosome 4.
DR Bgee; ENSDARG00000095705; Expressed in bone element and 30 other tissues.
DR ExpressionAtlas; Q5RGZ1; baseline and differential.
DR InterPro; IPR042426; CDPF1.
DR InterPro; IPR018785; Cys-rich_DPF.
DR PANTHER; PTHR31849; PTHR31849; 1.
DR Pfam; PF10170; C6_DPF; 1.
DR PRINTS; PR01995; UPF0595.
PE 3: Inferred from homology;
KW Reference proteome.
FT CHAIN 1..87
FT /note="Cysteine-rich DPF motif domain-containing protein 1"
FT /id="PRO_0000341363"
FT CONFLICT 41
FT /note="E -> G (in Ref. 2; AAI24073)"
FT /evidence="ECO:0000305"
FT CONFLICT 85
FT /note="A -> V (in Ref. 2; AAI24073)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 87 AA; 9518 MW; 55B5A11E094665BA CRC64;
MDLTEGSALG VFSCQLCEVS SPYSFYGQKP PNTRAIVLLE ECFGIKDPFS PEREKFLILG
SKCSLCSKTV CVGTVRRSCD SQSEAKL