CDRT4_MOUSE
ID CDRT4_MOUSE Reviewed; 179 AA.
AC Q9DA64; Q9D9Y3;
DT 15-JAN-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 03-AUG-2022, entry version 107.
DE RecName: Full=CMT1A duplicated region transcript 4 protein homolog;
GN Name=Cdrt4;
OS Mus musculus (Mouse).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
OX NCBI_TaxID=10090;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=C57BL/6J; TISSUE=Testis;
RX PubMed=16141072; DOI=10.1126/science.1112014;
RA Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
RA Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
RA Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.,
RA Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R.,
RA Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T.,
RA Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A.,
RA Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B.,
RA Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M.,
RA Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S.,
RA Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
RA Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D.,
RA Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M.,
RA Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H.,
RA Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V.,
RA Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S.,
RA Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H.,
RA Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N.,
RA Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F.,
RA Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G.,
RA Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z.,
RA Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
RA Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
RA Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S.,
RA Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K.,
RA Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R.,
RA van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H.,
RA Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M.,
RA Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C.,
RA Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S.,
RA Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K.,
RA Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M.,
RA Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C.,
RA Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A.,
RA Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.;
RT "The transcriptional landscape of the mammalian genome.";
RL Science 309:1559-1563(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=C57BL/6J;
RX PubMed=19468303; DOI=10.1371/journal.pbio.1000112;
RA Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X.,
RA Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y.,
RA Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S.,
RA Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R.,
RA Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K.,
RA Eichler E.E., Ponting C.P.;
RT "Lineage-specific biology revealed by a finished genome assembly of the
RT mouse.";
RL PLoS Biol. 7:E1000112-E1000112(2009).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Testis;
RX PubMed=15489334; DOI=10.1101/gr.2596504;
RG The MGC Project Team;
RT "The status, quality, and expansion of the NIH full-length cDNA project:
RT the Mammalian Gene Collection (MGC).";
RL Genome Res. 14:2121-2127(2004).
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DR EMBL; AK006125; BAB24420.1; -; mRNA.
DR EMBL; AK006342; BAB24537.1; -; mRNA.
DR EMBL; AL592215; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AL645847; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; BC048461; AAH48461.1; -; mRNA.
DR CCDS; CCDS24835.1; -.
DR RefSeq; NP_079772.1; NM_025496.1.
DR AlphaFoldDB; Q9DA64; -.
DR STRING; 10090.ENSMUSP00000048844; -.
DR PaxDb; Q9DA64; -.
DR PRIDE; Q9DA64; -.
DR ProteomicsDB; 283870; -.
DR Antibodypedia; 34822; 74 antibodies from 14 providers.
DR DNASU; 66338; -.
DR Ensembl; ENSMUST00000035854; ENSMUSP00000048844; ENSMUSG00000042200.
DR GeneID; 66338; -.
DR KEGG; mmu:66338; -.
DR UCSC; uc007jkj.1; mouse.
DR CTD; 284040; -.
DR MGI; MGI:1913588; Cdrt4.
DR VEuPathDB; HostDB:ENSMUSG00000042200; -.
DR eggNOG; ENOG502SXCX; Eukaryota.
DR GeneTree; ENSGT00390000005396; -.
DR HOGENOM; CLU_128820_0_0_1; -.
DR InParanoid; Q9DA64; -.
DR OMA; SRKPMMR; -.
DR OrthoDB; 1370721at2759; -.
DR PhylomeDB; Q9DA64; -.
DR TreeFam; TF338166; -.
DR BioGRID-ORCS; 66338; 1 hit in 72 CRISPR screens.
DR ChiTaRS; Cdrt4; mouse.
DR PRO; PR:Q9DA64; -.
DR Proteomes; UP000000589; Chromosome 11.
DR RNAct; Q9DA64; protein.
DR Bgee; ENSMUSG00000042200; Expressed in seminiferous tubule of testis and 29 other tissues.
DR Genevisible; Q9DA64; MM.
DR InterPro; IPR029185; CDRT4.
DR PANTHER; PTHR37885; PTHR37885; 1.
DR Pfam; PF15213; CDRT4; 1.
PE 2: Evidence at transcript level;
KW Reference proteome.
FT CHAIN 1..179
FT /note="CMT1A duplicated region transcript 4 protein
FT homolog"
FT /id="PRO_0000314904"
FT REGION 1..20
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 95
FT /note="L -> M (in Ref. 1; BAB24537)"
FT /evidence="ECO:0000305"
FT CONFLICT 103
FT /note="P -> T (in Ref. 1; BAB24537)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 179 AA; 20473 MW; DC66427F7AE71E84 CRC64;
MISRPESSLS GLESSQEVQK KTWNPRNYSA RLTENIGLPL ILLEKHNPWP AYVAYISPAV
TRITEKGWAR DLEYIYAAEK NGKPVKRSKH SAVLLKRRKP SKPSELMLKE TLSETMLPTW
ECSTIYVSPT FVPEPAQLQM DVREGPTSNY NKIIFSKRPA MRKLPFGLLQ ASKEMHTKD
