CGA1_ORYSJ
ID CGA1_ORYSJ Reviewed; 353 AA.
AC Q6YW48;
DT 18-JUL-2018, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 129.
DE RecName: Full=Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 {ECO:0000303|PubMed:23548780};
DE Short=OsCGA1 {ECO:0000303|PubMed:23548780};
GN Name=CGA1 {ECO:0000303|PubMed:23548780};
GN OrderedLocusNames=LOC_Os02g12790 {ECO:0000305},
GN Os02g0220400 {ECO:0000312|EMBL:BAS77697.1};
GN ORFNames=B1131G07.8 {ECO:0000312|EMBL:BAD17612.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP FUNCTION, INDUCTION BY LIGHT; NITROGEN; CYTOKININ; DARKNESS AND
RP GIBBERELLIN, DISRUPTION PHENOTYPE, AND TISSUE SPECIFICITY.
RX PubMed=23548780; DOI=10.1104/pp.113.217265;
RA Hudson D., Guevara D.R., Hand A.J., Xu Z., Hao L., Chen X., Zhu T.,
RA Bi Y.-M., Rothstein S.J.;
RT "Rice cytokinin GATA transcription Factor1 regulates chloroplast
RT development and plant architecture.";
RL Plant Physiol. 162:132-144(2013).
RN [6]
RP GENE FAMILY, AND REVIEW.
RX PubMed=25755661; DOI=10.3389/fpls.2015.00090;
RA Behringer C., Schwechheimer C.;
RT "B-GATA transcription factors - insights into their structure, regulation,
RT and role in plant development.";
RL Front. Plant Sci. 6:90-90(2015).
CC -!- FUNCTION: Transcriptional regulator that specifically binds 5'-GATA-3'
CC or 5'-GAT-3' motifs within gene promoters (By similarity). Influences
CC the expression of nuclear encoded chloroplast-targeted genes. Regulates
CC chloroplast development and promotes chlorophyll accumulation.
CC Modulates plant architecture (e.g. height, length and width of leaf
CC blades, and flowering tillers production) and represses tillering,
CC probably by modulating number of cells. Promotes senescence. Involved
CC in grain filling, panicle development and starch production
CC (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6,
CC ECO:0000269|PubMed:23548780}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250|UniProtKB:Q9SZI6,
CC ECO:0000255|PROSITE-ProRule:PRU00768}.
CC -!- TISSUE SPECIFICITY: Mostly expressed in leaves and stems, and, at low
CC levels, in roots. {ECO:0000269|PubMed:23548780}.
CC -!- INDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine)
CC treatments, but repressed by darkness and gibberellin (GA).
CC {ECO:0000269|PubMed:23548780}.
CC -!- DISRUPTION PHENOTYPE: Reduced chlorophyll, reduced height and increased
CC tillering. {ECO:0000269|PubMed:23548780}.
CC -!- SIMILARITY: Belongs to the type IV zinc-finger family. Class B
CC subfamily. {ECO:0000305}.
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DR EMBL; AP005797; BAD17612.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF08230.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS77697.1; -; Genomic_DNA.
DR EMBL; AK099607; BAG94221.1; -; mRNA.
DR RefSeq; XP_015625859.1; XM_015770373.1.
DR AlphaFoldDB; Q6YW48; -.
DR STRING; 4530.OS02T0220400-01; -.
DR PaxDb; Q6YW48; -.
DR PRIDE; Q6YW48; -.
DR EnsemblPlants; Os02t0220400-01; Os02t0220400-01; Os02g0220400.
DR GeneID; 4328751; -.
DR Gramene; Os02t0220400-01; Os02t0220400-01; Os02g0220400.
DR KEGG; osa:4328751; -.
DR eggNOG; KOG1601; Eukaryota.
DR HOGENOM; CLU_059658_0_0_1; -.
DR InParanoid; Q6YW48; -.
DR OMA; IDGDMIQ; -.
DR OrthoDB; 1160731at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009658; P:chloroplast organization; IMP:UniProtKB.
DR GO; GO:0099402; P:plant organ development; IMP:UniProtKB.
DR GO; GO:0009909; P:regulation of flower development; IMP:UniProtKB.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR GO; GO:0009646; P:response to absence of light; IEP:UniProtKB.
DR GO; GO:0009735; P:response to cytokinin; IEP:UniProtKB.
DR GO; GO:0009739; P:response to gibberellin; IEP:UniProtKB.
DR GO; GO:0009416; P:response to light stimulus; IEP:UniProtKB.
DR GO; GO:1901698; P:response to nitrogen compound; IEP:UniProtKB.
DR CDD; cd00202; ZnF_GATA; 1.
DR Gene3D; 3.30.50.10; -; 1.
DR InterPro; IPR000679; Znf_GATA.
DR InterPro; IPR013088; Znf_NHR/GATA.
DR Pfam; PF00320; GATA; 1.
DR SMART; SM00401; ZnF_GATA; 1.
DR PROSITE; PS00344; GATA_ZN_FINGER_1; 1.
DR PROSITE; PS50114; GATA_ZN_FINGER_2; 1.
PE 2: Evidence at transcript level;
KW Metal-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..353
FT /note="Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION
FT FACTOR 1"
FT /id="PRO_0000444796"
FT ZN_FING 178..203
FT /note="GATA-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00094"
FT REGION 142..166
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 137..144
FT /note="Nuclear localization signal 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00768"
FT MOTIF 244..251
FT /note="Nuclear localization signal 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00768"
SQ SEQUENCE 353 AA; 37638 MW; 238FEE91DA38C2DB CRC64;
MSTIYMSQLP ATLPLMEGDQ DQGLYPAFHR AKDPPILFPF MIDSAVEHQG QIYGDQGLRR
QQVLGESNQQ FNDHMMMGGS DVFLTPSPFR PTIQSIGSDM IQRSSYDPYD IESNNKQHAN
GSTSKWMSTP PMKMRIIRKG AATDPEGGAV RKPRRRAQAH QDESQQQLQQ ALGVVRVCSD
CNTTKTPLWR SGPCGPKSLC NACGIRQRKA RRAMAAAANG GAAVAPAKSV AAAPVNNKPA
AKKEKRAADV DRSLPFKKRC KMVDHVAAAV AATKPTAAGE VVAAAPKDQD HVIVVGGENA
AATSMPAQNP ISKAAATAAA AAASPAFFHG LPRDEITDAA MLLMTLSCGL VHS
