CHMD_STRBI
ID CHMD_STRBI Reviewed; 326 AA.
AC Q5SFA6;
DT 22-JAN-2014, integrated into UniProtKB/Swiss-Prot.
DT 21-DEC-2004, sequence version 1.
DT 03-AUG-2022, entry version 47.
DE RecName: Full=dTDP-4-dehydro-6-deoxy-D-allose reductase {ECO:0000305|PubMed:23116432};
DE EC=1.1.1.364 {ECO:0000269|PubMed:23116432};
DE AltName: Full=dTDP-4-dehydro-6-deoxy-alpha-D-gulose 4-ketoreductase {ECO:0000305};
DE AltName: Full=dTDP-4-keto-6-deoxyallose reductase {ECO:0000303|PubMed:23116432};
GN Name=chmD;
OS Streptomyces bikiniensis.
OC Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae;
OC Streptomyces.
OX NCBI_TaxID=1896;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=NRRL 2737;
RX PubMed=15561847; DOI=10.1128/aac.48.12.4703-4712.2004;
RA Ward S.L., Hu Z., Schirmer A., Reid R., Revill W.P., Reeves C.D.,
RA Petrakovsky O.V., Dong S.D., Katz L.;
RT "Chalcomycin biosynthesis gene cluster from Streptomyces bikiniensis: novel
RT features of an unusual ketolide produced through expression of the chm
RT polyketide synthase in Streptomyces fradiae.";
RL Antimicrob. Agents Chemother. 48:4703-4712(2004).
RN [2]
RP FUNCTION, AND CATALYTIC ACTIVITY.
RC STRAIN=NRRL 2737;
RX PubMed=23116432; DOI=10.1021/bi3012737;
RA Kubiak R.L., Phillips R.K., Zmudka M.W., Ahn M.R., Maka E.M., Pyeatt G.L.,
RA Roggensack S.J., Holden H.M.;
RT "Structural and functional studies on a 3'-epimerase involved in the
RT biosynthesis of dTDP-6-deoxy-D-allose.";
RL Biochemistry 51:9375-9383(2012).
CC -!- FUNCTION: Catalyzes the stereospecific reduction of the C-4 keto group
CC of dTDP-4-dehydro-6-deoxy-D-allose, leading to dTDP-6-deoxy-D-allose,
CC an intermediate in the biosynthesis of the mycinose moiety of the
CC chalcomycin antibiotic. {ECO:0000269|PubMed:23116432}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=dTDP-6-deoxy-alpha-D-allose + NAD(+) = dTDP-4-dehydro-6-deoxy-
CC alpha-D-allose + H(+) + NADH; Xref=Rhea:RHEA:36679,
CC ChEBI:CHEBI:15378, ChEBI:CHEBI:57540, ChEBI:CHEBI:57945,
CC ChEBI:CHEBI:74143, ChEBI:CHEBI:76253; EC=1.1.1.364;
CC Evidence={ECO:0000269|PubMed:23116432};
CC -!- CATALYTIC ACTIVITY:
CC Reaction=dTDP-6-deoxy-alpha-D-allose + NADP(+) = dTDP-4-dehydro-6-
CC deoxy-alpha-D-allose + H(+) + NADPH; Xref=Rhea:RHEA:39883,
CC ChEBI:CHEBI:15378, ChEBI:CHEBI:57783, ChEBI:CHEBI:58349,
CC ChEBI:CHEBI:74143, ChEBI:CHEBI:76253; EC=1.1.1.364;
CC Evidence={ECO:0000269|PubMed:23116432};
CC -!- SIMILARITY: Belongs to the NAD(P)-dependent epimerase/dehydratase
CC family. {ECO:0000305}.
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DR EMBL; AY509120; AAS79455.1; -; Genomic_DNA.
DR AlphaFoldDB; Q5SFA6; -.
DR SMR; Q5SFA6; -.
DR GO; GO:0016491; F:oxidoreductase activity; IEA:UniProtKB-KW.
DR GO; GO:0017000; P:antibiotic biosynthetic process; IEA:UniProtKB-KW.
DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:UniProtKB-KW.
DR InterPro; IPR001509; Epimerase_deHydtase.
DR InterPro; IPR036291; NAD(P)-bd_dom_sf.
DR Pfam; PF01370; Epimerase; 1.
DR SUPFAM; SSF51735; SSF51735; 1.
PE 1: Evidence at protein level;
KW Antibiotic biosynthesis; Carbohydrate metabolism; NADP; Oxidoreductase.
FT CHAIN 1..326
FT /note="dTDP-4-dehydro-6-deoxy-D-allose reductase"
FT /id="PRO_0000425104"
FT ACT_SITE 160
FT /note="Proton donor/acceptor"
FT /evidence="ECO:0000250"
FT BINDING 15..21
FT /ligand="NADP(+)"
FT /ligand_id="ChEBI:CHEBI:58349"
FT /evidence="ECO:0000250"
FT BINDING 129..132
FT /ligand="NADP(+)"
FT /ligand_id="ChEBI:CHEBI:58349"
FT /evidence="ECO:0000250"
FT BINDING 164
FT /ligand="NADP(+)"
FT /ligand_id="ChEBI:CHEBI:58349"
FT /evidence="ECO:0000250"
FT BINDING 187..190
FT /ligand="NADP(+)"
FT /ligand_id="ChEBI:CHEBI:58349"
FT /evidence="ECO:0000250"
FT SITE 164
FT /note="Lowers pKa of active site Tyr"
FT /evidence="ECO:0000250"
SQ SEQUENCE 326 AA; 36411 MW; 8F5CA0CBB64BD70B CRC64;
MTADRWAGRT VLVTGALGFI GSHFVRQLEA RGAEVLALYR TERPQLQAEL AALDRVRLIR
TELRDESDVR GAFKYLAPSI DTVVHCAAMD GNAQFKLERS AEILDSNQRT ISHLLNCVRD
FGVGEAVVMS SSELYCAPPT AAAHEDDDFR RSMRYTDNGY VLSKTYGEIL ARLHREQFGT
NVFLVRPGNV YGPGDGYDPS RGRVIPSMLA KADAGEEIEI WGDGSQTRSF IHVTDLVRAS
LRLLETGKYP EMNVAGAEQV SILELARMVM AVLGRPERIR LDPGRPVGAP SRLLDLTRMS
EVIDFEPQPL RTGLEETARW FRHHTR