CHR19_ORYSJ
ID CHR19_ORYSJ Reviewed; 1128 AA.
AC Q60EX7; A0A0P0WHU3;
DT 07-APR-2021, integrated into UniProtKB/Swiss-Prot.
DT 23-NOV-2004, sequence version 1.
DT 03-AUG-2022, entry version 129.
DE RecName: Full=Probable ATP-dependent DNA helicase CHR719 {ECO:0000305};
DE EC=3.6.4.12 {ECO:0000305};
DE AltName: Full=Protein CHROMATIN REMODELING 719 {ECO:0000303|PubMed:32808364};
DE Short=OsCHR719 {ECO:0000303|PubMed:32808364};
GN Name=CHR719 {ECO:0000303|PubMed:32808364};
GN OrderedLocusNames=Os05g0144300 {ECO:0000312|EMBL:BAS92231.1},
GN LOC_Os05g05230 {ECO:0000305};
GN ORFNames=OJ1607_F09.9 {ECO:0000312|EMBL:AAU90202.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP INTERACTION WITH LFR, AND SUBCELLULAR LOCATION.
RX PubMed=32808364; DOI=10.1111/tpj.14967;
RA Qi D., Wen Q., Meng Z., Yuan S., Guo H., Zhao H., Cui S.;
RT "OsLFR is essential for early endosperm and embryo development by
RT interacting with SWI/SNF complex members in Oryza sativa.";
RL Plant J. 104:901-916(2020).
CC -!- FUNCTION: Probable chromatin-remodeling factor involved in root and
CC shoot stem cell initiation, and root apical meristem (RAM) and shoot
CC apical meristem (SAM) maintenance. {ECO:0000250|UniProtKB:F4J9M5}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.12;
CC Evidence={ECO:0000305};
CC -!- SUBUNIT: Interacts with LFR. {ECO:0000269|PubMed:32808364}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:32808364}.
CC -!- SIMILARITY: Belongs to the helicase family. {ECO:0000305}.
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DR EMBL; AC104283; AAU90202.1; -; Genomic_DNA.
DR EMBL; AP008211; BAF16538.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS92231.1; -; Genomic_DNA.
DR RefSeq; XP_015640100.1; XM_015784614.1.
DR AlphaFoldDB; Q60EX7; -.
DR SMR; Q60EX7; -.
DR STRING; 4530.OS05T0144300-01; -.
DR iPTMnet; Q60EX7; -.
DR PaxDb; Q60EX7; -.
DR PRIDE; Q60EX7; -.
DR EnsemblPlants; Os05t0144300-01; Os05t0144300-01; Os05g0144300.
DR GeneID; 4337784; -.
DR Gramene; Os05t0144300-01; Os05t0144300-01; Os05g0144300.
DR KEGG; osa:4337784; -.
DR eggNOG; KOG0386; Eukaryota.
DR HOGENOM; CLU_000315_15_3_1; -.
DR InParanoid; Q60EX7; -.
DR OMA; FNTSIQH; -.
DR OrthoDB; 685477at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0008094; F:ATP-dependent activity, acting on DNA; IBA:GO_Central.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IBA:GO_Central.
DR GO; GO:0003678; F:DNA helicase activity; IEA:UniProtKB-EC.
DR GO; GO:0042393; F:histone binding; IEA:InterPro.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR GO; GO:0040008; P:regulation of growth; IEA:UniProtKB-KW.
DR Gene3D; 3.40.50.10810; -; 1.
DR Gene3D; 3.40.50.300; -; 1.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR029295; SnAC.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR000330; SNF2_N.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF14619; SnAC; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM01314; SnAC; 1.
DR SUPFAM; SSF52540; SSF52540; 2.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 1: Evidence at protein level;
KW ATP-binding; Chromatin regulator; Developmental protein; Growth regulation;
KW Helicase; Hydrolase; Nucleotide-binding; Nucleus; Reference proteome.
FT CHAIN 1..1128
FT /note="Probable ATP-dependent DNA helicase CHR719"
FT /id="PRO_0000452395"
FT DOMAIN 453..619
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
FT DOMAIN 751..912
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00542"
FT REGION 91..110
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 353..415
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1076..1097
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 569..572
FT /note="DEAH box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
FT COMPBIAS 353..374
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 391..415
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 466..473
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541"
SQ SEQUENCE 1128 AA; 128276 MW; B33919B84E6B0600 CRC64;
MAASVEAAAA AVVAPPASVG GDEVVVGGGG GGASEQARTL IGALNLLSRN LPLPPAVLHA
VSSIYHGGDA WEGEGEEGGE EEVAAAAAAV GDGCGESGEG EEDRADASPG ADEGVTLIQE
LEDAVLKNQG PYMSYSELTA LKEDRFNTSI QHRLTELEGL PSTRGEDLQM KCLLELYGLK
LLDLQKKVRT DISAEYWLHK KCAHPDRQLF DWGMMRIRYP FTMYGIGDSF SMDADDINRK
KRFSERISRL EEEEKNQAEI RKRKFFSEIL NAAREYQLQV PASYKRKKQR NDGVLAWHVR
ARQRINRMEK SRLQVLKAGD QEAYLRMVEE SKNERLKLLL GKTNELLEGI GKAVQRQKDA
EHVSRPDGSE LPKGSESDDC SQISGLKVES PDEESPSDVD ADHHSSADHS KFNAGHRLDS
TVHSIEEKVT EQPSALEGGE LRPYQLEGLQ WMLSLFNNNL NGILADEMGL GKTIQTIALI
AYLLEKKEVT GPHLIIAPKA VLPNWSNEFK TWAPSIGTIL YDGRPDDRKA LREKNFGQRQ
FNVLLTHYDL ILKDLKFLKK VHWHYLIVDE GHRLKNHECA LARTLVSRYQ IRRRLLLTGT
PIQNSLQELW SLLNFILPNI FNSSQNFEEW FNAPFACEVS LNDEEQLLII HRLHQVLRPF
LLRRKKDEVE KYLPVKTQVI LKCDMSAWQK AYYEQVTSNG RVSLGSGLKS KALQNLSMQL
RKCCNHPYLF VEHYNMYQRQ EIVRSSGKFE LLDRLLPKLQ RAGHRVLLFS QMTKLLDILE
VYLQMYQFKY MRLDGSTKTE ERGRLLADFN KKDSEYFLFL LSTRAGGLGL NLQTADTVII
FDSDWNPQMD QQAEDRAHRI GQKNEVRVFV LVSVGSIEEE ILDRAKQKMG IDAKVIQAGL
FNTTSTAQDR RALLQEILRR GTSSLGTDIP SEREINRLAA RNDEEFWLFE KMDEERRQRE
NYKPRLMEGI EVPDWVFAND TLTEKIPADE PQNVLLTTKR RRKEVVYSDS FGDQWMKADD
VVEETPRMAP RAKRSAYSSD VQEVDFSERR KRHKSLVNIA DDASIPMWTP EKVRAGVSSY
SKDENEDDAE DESTTSVLQG GSFTWKTLRR KRSSHFSNSS DSKGRSAF
