CHR42_ARATH
ID CHR42_ARATH Reviewed; 121 AA.
AC F4K6X0; Q8L8M4;
DT 23-FEB-2022, integrated into UniProtKB/Swiss-Prot.
DT 12-APR-2017, sequence version 2.
DT 03-AUG-2022, entry version 64.
DE RecName: Full=Protein CHLORORESPIRATORY REDUCTION 42, chloroplastic {ECO:0000303|PubMed:22274627};
DE Flags: Precursor;
GN Name=CRR42 {ECO:0000303|PubMed:22274627};
GN OrderedLocusNames=At5g20935 {ECO:0000312|Araport:AT5G20935};
GN ORFNames=F22D1 {ECO:0000312|EMBL:AF296834};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 9-121.
RC STRAIN=cv. Columbia;
RA Shinn P., Chen H., Kim C.J., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 14-121.
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP FUNCTION, DISRUPTION PHENOTYPE, SUBUNIT, AND SUBCELLULAR LOCATION.
RX PubMed=22274627; DOI=10.1105/tpc.111.090597;
RA Peng L., Fukao Y., Fujiwara M., Shikanai T.;
RT "Multistep assembly of chloroplast NADH dehydrogenase-like subcomplex A
RT requires several nucleus-encoded proteins, including CRR41 and CRR42, in
RT Arabidopsis.";
RL Plant Cell 24:202-214(2012).
CC -!- FUNCTION: Required for both formation and activity of the chloroplast
CC NAD(P)H dehydrogenase (NDH) complex of the photosynthetic electron
CC transport chain (PubMed:22274627). Functions in assembly or
CC stabilization of the NDH complex; probably involved, together with CRR1
CC and CRR6, in the incorporation of NdhJ, NdhM, NdhK and NdhI into the
CC NDH subcomplex A assembly intermediate (NAI500) to produce the complex
CC NAI400 (PubMed:22274627). {ECO:0000269|PubMed:22274627}.
CC -!- SUBUNIT: Biogenesis factor component of the plastidial NDH subcomplex
CC A. {ECO:0000269|PubMed:22274627}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000255}. Plastid,
CC chloroplast stroma {ECO:0000269|PubMed:22274627}.
CC -!- DISRUPTION PHENOTYPE: Specifically defective in the accumulation of
CC subcomplex A, a stroma-protruding arm of the chloroplast NADH
CC dehydrogenase-like complex (NDH). {ECO:0000269|PubMed:22274627}.
CC -!- SEQUENCE CAUTION:
CC Sequence=ABD38900.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR EMBL; AF296834; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002688; AED92908.2; -; Genomic_DNA.
DR EMBL; BT024561; ABD38900.1; ALT_INIT; mRNA.
DR EMBL; AY088909; AAM67215.1; -; mRNA.
DR RefSeq; NP_568406.2; NM_122102.3.
DR AlphaFoldDB; F4K6X0; -.
DR STRING; 3702.AT5G20935.1; -.
DR iPTMnet; F4K6X0; -.
DR PaxDb; F4K6X0; -.
DR PRIDE; F4K6X0; -.
DR ProteomicsDB; 210328; -.
DR EnsemblPlants; AT5G20935.1; AT5G20935.1; AT5G20935.
DR GeneID; 832218; -.
DR Gramene; AT5G20935.1; AT5G20935.1; AT5G20935.
DR Araport; AT5G20935; -.
DR TAIR; locus:505006624; AT5G20935.
DR eggNOG; KOG1151; Eukaryota.
DR HOGENOM; CLU_158887_2_0_1; -.
DR InParanoid; F4K6X0; -.
DR OMA; CLRANTG; -.
DR OrthoDB; 1563073at2759; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; F4K6X0; baseline and differential.
DR GO; GO:0009570; C:chloroplast stroma; IDA:TAIR.
DR GO; GO:0009536; C:plastid; HDA:TAIR.
DR GO; GO:0010258; P:NADH dehydrogenase complex (plastoquinone) assembly; IMP:TAIR.
DR InterPro; IPR021495; CRR42-like.
DR PANTHER; PTHR36799; PTHR36799; 1.
DR Pfam; PF11347; DUF3148; 1.
PE 1: Evidence at protein level;
KW Chloroplast; Plastid; Reference proteome; Transit peptide.
FT TRANSIT 1..?
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN ?..121
FT /note="Protein CHLORORESPIRATORY REDUCTION 42,
FT chloroplastic"
FT /id="PRO_0000454913"
SQ SEQUENCE 121 AA; 13273 MW; 6635FB4911F404E8 CRC64;
MALSFVSSTR FSKMQYGIWH SGSFTQRVSV RCCEIANEAP RPKSKLQVGS PIIIVEAPKV
IKTAASMPCL RANSGLVKPG DVGRIVSRKP KDLWAVRLSI GTYLLDGKYF KALELDEGDS
D
