ID   CID6_ARATH              Reviewed;         175 AA.
AC   Q6NQH9;
DT   14-MAY-2014, integrated into UniProtKB/Swiss-Prot.
DT   05-JUL-2004, sequence version 1.
DT   25-MAY-2022, entry version 92.
DE   RecName: Full=Polyadenylate-binding protein-interacting protein 6;
DE            Short=PABP-interacting protein 6;
DE            Short=Poly(A)-binding protein-interacting protein 6;
DE   AltName: Full=PAM2-containing protein CID6;
DE   AltName: Full=Protein CTC-INTERACTING DOMAIN 6;
GN   Name=CID6; Synonyms=IPH1; OrderedLocusNames=At5g25540; ORFNames=T14C9.80;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130714; DOI=10.1038/35048507;
RA   Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA   Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA   Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA   Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA   Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA   O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA   Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA   Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA   Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA   Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA   Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA   Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA   Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA   Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA   Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA   Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA   McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA   Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA   Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA   Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA   Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA   Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA   Bevan M., Fransz P.F.;
RT   "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL   Nature 408:823-826(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA   Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA   Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA   Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA   Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA   Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA   Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA   Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA   Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA   Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA   Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA   Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia; TISSUE=Rosette leaf;
RX   PubMed=19423640; DOI=10.1093/dnares/dsp009;
RA   Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M.,
RA   Shinozaki K.;
RT   "Analysis of multiple occurrences of alternative splicing events in
RT   Arabidopsis thaliana using novel sequenced full-length cDNAs.";
RL   DNA Res. 16:155-164(2009).
RN   [5]
RP   GENE FAMILY, AND PAM2 MOTIF.
RX   PubMed=15650869; DOI=10.1007/s00438-004-1090-9;
RA   Bravo J., Aguilar-Henonin L., Olmedo G., Guzman P.;
RT   "Four distinct classes of proteins as interaction partners of the PABC
RT   domain of Arabidopsis thaliana Poly(A)-binding proteins.";
RL   Mol. Genet. Genomics 272:651-665(2005).
CC   -!- DOMAIN: Contains a PAM2-like motif, which seems to be involved in the
CC       binding to the PABC/CTC domain of PAB proteins.
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DR   EMBL; AC006601; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; CP002688; AED93460.1; -; Genomic_DNA.
DR   EMBL; CP002688; ANM69448.1; -; Genomic_DNA.
DR   EMBL; BT010477; AAQ65100.1; -; mRNA.
DR   EMBL; AK316708; BAH19435.1; -; mRNA.
DR   RefSeq; NP_001331123.1; NM_001343938.1.
DR   RefSeq; NP_197936.1; NM_122465.4.
DR   AlphaFoldDB; Q6NQH9; -.
DR   SMR; Q6NQH9; -.
DR   iPTMnet; Q6NQH9; -.
DR   PaxDb; Q6NQH9; -.
DR   PRIDE; Q6NQH9; -.
DR   ProteomicsDB; 246908; -.
DR   EnsemblPlants; AT5G25540.1; AT5G25540.1; AT5G25540.
DR   EnsemblPlants; AT5G25540.3; AT5G25540.3; AT5G25540.
DR   GeneID; 832629; -.
DR   Gramene; AT5G25540.1; AT5G25540.1; AT5G25540.
DR   Gramene; AT5G25540.3; AT5G25540.3; AT5G25540.
DR   KEGG; ath:AT5G25540; -.
DR   Araport; AT5G25540; -.
DR   TAIR; locus:2179439; AT5G25540.
DR   eggNOG; ENOG502S2Y2; Eukaryota.
DR   HOGENOM; CLU_123587_0_0_1; -.
DR   InParanoid; Q6NQH9; -.
DR   OMA; NIKHPEA; -.
DR   OrthoDB; 1458065at2759; -.
DR   PhylomeDB; Q6NQH9; -.
DR   PRO; PR:Q6NQH9; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   ExpressionAtlas; Q6NQH9; baseline and differential.
DR   Genevisible; Q6NQH9; AT.
DR   GO; GO:0043130; F:ubiquitin binding; IEA:InterPro.
DR   CDD; cd14371; CUE_CID7_like; 1.
DR   InterPro; IPR041806; CID5/6/7_CUE.
DR   InterPro; IPR038981; CID5/CID6.
DR   InterPro; IPR003892; CUE.
DR   PANTHER; PTHR37252; PTHR37252; 1.
DR   PROSITE; PS51140; CUE; 1.
PE   2: Evidence at transcript level;
KW   Reference proteome.
FT   CHAIN           1..175
FT                   /note="Polyadenylate-binding protein-interacting protein 6"
FT                   /id="PRO_0000428897"
FT   DOMAIN          83..126
FT                   /note="CUE"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00468"
FT   REGION          145..175
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOTIF           7..17
FT                   /note="PAM2-like"
FT   COMPBIAS        149..175
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   175 AA;  19347 MW;  10EBE3B546666D8A CRC64;
     MKSGSSTLNP YAAAYVPLSK REGSLVDTKP VTQQHMQQQH HQQQPYYGYG VQGMGSYQGT
     QMSPKKSPSE MVYNHQLKDE DLEMDMDIEY LLATYPGLSQ ESINDVYLAN TCDLDATIEM
     LNQLEIYSTE AEEYLPDTLD IGDVPEIITE SSKQKNDGSS ASSSSGIRNA NVSSS