CIGR1_ORYSJ
ID CIGR1_ORYSJ Reviewed; 571 AA.
AC Q69VG1; Q0D5P2; Q8GVE2;
DT 16-AUG-2005, integrated into UniProtKB/Swiss-Prot.
DT 13-SEP-2004, sequence version 1.
DT 03-AUG-2022, entry version 86.
DE RecName: Full=Chitin-inducible gibberellin-responsive protein 1;
GN Name=CIGR1; OrderedLocusNames=Os07g0545800, LOC_Os07g36170;
GN ORFNames=OsJ_24639 {ECO:0000312|EMBL:EEE67359.1}, P0006G05.102;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, SUBCELLULAR LOCATION, AND INDUCTION.
RC STRAIN=cv. Nipponbare;
RX PubMed=12591613; DOI=10.1016/s0167-4781(02)00626-7;
RA Day R.B., Shibuya N., Minami E.;
RT "Identification and characterization of two new members of the GRAS gene
RT family in rice responsive to N-acetylchitooligosaccharide elicitor.";
RL Biochim. Biophys. Acta 1625:261-268(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
CC -!- FUNCTION: May play a regulatory role in the early step of
CC oligosaccharide elicitor response, downstream of the membrane-
CC associated high-affinity chitin-binding protein.
CC {ECO:0000269|PubMed:12591613}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:12591613}.
CC -!- INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide)
CC extracted from the rice blast fungus (M.grisea) cell wall. Strongest
CC induction by chitin oligomer with greater degree of polymerization
CC (heptamer). By inoculation of M.grisea in rice cell suspension culture.
CC {ECO:0000269|PubMed:12591613}.
CC -!- MISCELLANEOUS: Induction by oligosaccharide elicitor is independent of
CC de novo protein synthesis.
CC -!- SIMILARITY: Belongs to the GRAS family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAL61820.1; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; AY062209; AAL61820.1; ALT_FRAME; mRNA.
DR EMBL; AP004235; BAD30510.1; -; Genomic_DNA.
DR EMBL; AP008213; BAF21831.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT02004.1; -; Genomic_DNA.
DR EMBL; CM000144; EEE67359.1; -; Genomic_DNA.
DR RefSeq; XP_015646796.1; XM_015791310.1.
DR AlphaFoldDB; Q69VG1; -.
DR SMR; Q69VG1; -.
DR STRING; 4530.OS07T0545800-01; -.
DR PaxDb; Q69VG1; -.
DR PRIDE; Q69VG1; -.
DR EnsemblPlants; Os07t0545800-01; Os07t0545800-01; Os07g0545800.
DR GeneID; 4343521; -.
DR Gramene; Os07t0545800-01; Os07t0545800-01; Os07g0545800.
DR KEGG; osa:4343521; -.
DR eggNOG; ENOG502QRZD; Eukaryota.
DR HOGENOM; CLU_011924_6_2_1; -.
DR InParanoid; Q69VG1; -.
DR OMA; RYSEHYT; -.
DR OrthoDB; 318544at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000007752; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR Genevisible; Q69VG1; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR InterPro; IPR005202; TF_GRAS.
DR PANTHER; PTHR31636; PTHR31636; 1.
DR Pfam; PF03514; GRAS; 1.
DR PROSITE; PS50985; GRAS; 1.
PE 2: Evidence at transcript level;
KW Nucleus; Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..571
FT /note="Chitin-inducible gibberellin-responsive protein 1"
FT /id="PRO_0000132229"
FT DOMAIN 192..571
FT /note="GRAS"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 61..80
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 151..180
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 199..259
FT /note="Leucine repeat I (LRI)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 278..343
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 359..391
FT /note="Leucine repeat II (LRII)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 400..494
FT /note="PFYRE"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 497..571
FT /note="SAW"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT MOTIF 309..313
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
SQ SEQUENCE 571 AA; 64602 MW; B589381303561B33 CRC64;
MDLHQLLKYR LTGANVVYEI PTENNLQNSP WQANPLKYEF SDSPYTPLSS QFECDNLSAL
TNTPDNQSST ETISAQPISP LEADSSYRQA GILLQENIQV GADPLYATSR HNMQHALREI
ETVLMAPDTD DATTSTKHEF EEIKPAQLVR QRSRTWSHES RQPLPGVGRS QFASGGYPTA
SYEFRPEKRQ RELREDPQII VKQLLTRCAE ALSEDRTEEF HKLVQEARGV VSINGEPIQR
LGAYLLEGLV ARHGNSGTNI YRALKCREPE SKELLSYMRI LYNICPYFKF GYMAANGAIA
EALRTENNIH IIDFQIAQGT QWITLIQALA ARPGGPPRVR ITGIDDPVSE YARGEGLDIV
GKMLKSMSEE FKIPLEFTPL SVYATQVTKE MLEIRPGEAL SVNFTLQLHH TPDESVDVNN
PRDGLLRMVK GLSPKVTTLV EQESHTNTTP FLMRFGETME YYSAMFESID ANLPRDNKER
ISVEQHCLAK DIVNIIACEG KDRVERHELL GKWKSRLTMA GFRPYPLSSY VNSVIRKLLA
CYSDKYTLDE KDGAMLLGWR SRKLISASAW H
