CIGR2_ORYSJ
ID CIGR2_ORYSJ Reviewed; 544 AA.
AC Q8GVE1; Q0D544;
DT 16-AUG-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2003, sequence version 1.
DT 03-AUG-2022, entry version 92.
DE RecName: Full=Chitin-inducible gibberellin-responsive protein 2;
GN Name=CIGR2; OrderedLocusNames=Os07g0583600, LOC_Os07g39470;
GN ORFNames=OJ1127_E01.113, OsJ_24900 {ECO:0000312|EMBL:EAZ40446.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, SUBCELLULAR LOCATION, AND INDUCTION.
RC STRAIN=cv. Nipponbare;
RX PubMed=12591613; DOI=10.1016/s0167-4781(02)00626-7;
RA Day R.B., Shibuya N., Minami E.;
RT "Identification and characterization of two new members of the GRAS gene
RT family in rice responsive to N-acetylchitooligosaccharide elicitor.";
RL Biochim. Biophys. Acta 1625:261-268(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: May play a regulatory role in the early step of
CC oligosaccharide elicitor response, downstream of the membrane-
CC associated high-affinity chitin-binding protein.
CC {ECO:0000269|PubMed:12591613}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:12591613}.
CC -!- INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide)
CC extracted from the rice blast fungus (M.grisea) cell wall. Strongest
CC induction by chitin oligomer with greater degree of polymerization
CC (heptamer). By inoculation of M.grisea in rice cell suspension culture.
CC {ECO:0000269|PubMed:12591613}.
CC -!- MISCELLANEOUS: Induction by oligosaccharide elicitor is independent of
CC de novo protein synthesis.
CC -!- SIMILARITY: Belongs to the GRAS family. {ECO:0000305}.
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DR EMBL; AY062210; AAL61821.1; -; mRNA.
DR EMBL; AP003747; BAC55608.1; -; Genomic_DNA.
DR EMBL; AP008213; BAF22029.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT02360.1; -; Genomic_DNA.
DR EMBL; CM000144; EAZ40446.1; -; Genomic_DNA.
DR EMBL; AK073470; BAG93469.1; -; mRNA.
DR EMBL; AK098890; BAG93797.1; -; mRNA.
DR EMBL; AK122131; BAH00810.1; -; mRNA.
DR RefSeq; XP_015646745.1; XM_015791259.1.
DR AlphaFoldDB; Q8GVE1; -.
DR SMR; Q8GVE1; -.
DR STRING; 4530.OS07T0583600-01; -.
DR PaxDb; Q8GVE1; -.
DR PRIDE; Q8GVE1; -.
DR EnsemblPlants; Os07t0583600-01; Os07t0583600-01; Os07g0583600.
DR EnsemblPlants; Os07t0583600-02; Os07t0583600-02; Os07g0583600.
DR GeneID; 4343735; -.
DR Gramene; Os07t0583600-01; Os07t0583600-01; Os07g0583600.
DR Gramene; Os07t0583600-02; Os07t0583600-02; Os07g0583600.
DR KEGG; osa:4343735; -.
DR eggNOG; ENOG502QRZD; Eukaryota.
DR HOGENOM; CLU_011924_6_0_1; -.
DR InParanoid; Q8GVE1; -.
DR OMA; FAIDLMI; -.
DR OrthoDB; 483185at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000007752; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR ExpressionAtlas; Q8GVE1; baseline and differential.
DR Genevisible; Q8GVE1; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR InterPro; IPR030018; CIGR2.
DR InterPro; IPR005202; TF_GRAS.
DR PANTHER; PTHR31636; PTHR31636; 1.
DR PANTHER; PTHR31636:SF251; PTHR31636:SF251; 1.
DR Pfam; PF03514; GRAS; 1.
DR PROSITE; PS50985; GRAS; 1.
PE 2: Evidence at transcript level;
KW Nucleus; Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..544
FT /note="Chitin-inducible gibberellin-responsive protein 2"
FT /id="PRO_0000132230"
FT DOMAIN 165..544
FT /note="GRAS"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 1..123
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 172..232
FT /note="Leucine repeat I (LRI)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 251..316
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 332..364
FT /note="Leucine repeat II (LRII)"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 373..467
FT /note="PFYRE"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT REGION 470..544
FT /note="SAW"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT MOTIF 282..286
FT /note="VHIID"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01191"
FT COMPBIAS 1..30
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 59..73
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 81..115
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 544 AA; 60108 MW; CCF73F2DFFA05D48 CRC64;
MADTPTSRMI HPFSNIPSQN LKQFQYSDNP QHPCHPYRAP SDTHVVPHHY GLKSHSPDAG
YESQATPNKY TLDSSEGAGC MRHDSPSSQS FTTRSGSPLS QEDSHSDSTD GSPVGASCVT
EDPNDLKQKL KDLEAVMLGP DSEIVNSLEN SVANQLSLEP EKWVRMMGIP RGNLKELLIA
CARAVEEKNS FAIDMMIPEL RKIVSVSGEP LERLGAYMVE GLVARLASSG ISIYKALKCK
EPKSSDLLSY MHFLYEACPY FKFGYMSANG AIAEAVKGED RIHIIDFHIS QGAQWISLLQ
ALAARPGGPP TVRITGIDDS VSAYARGGGL ELVGRRLSHI ASLCKVPFEF HPLAISGSKV
EAAHLGVIPG EALAVNFTLE LHHIPDESVS TANHRDRLLR MVKSLSPKVL TLVEMESNTN
TAPFPQRFAE TLDYYTAIFE SIDLTLPRDD RERINMEQHC LAREIVNLIA CEGEERAERY
EPFGKWKARL TMAGFRPSPL SSLVNATIRT LLQSYSDNYK LAERDGALYL GWKSRPLVVS
SAWH
