CLPC3_ORYSJ
ID CLPC3_ORYSJ Reviewed; 932 AA.
AC Q53LY0; A0A0P0Y0W1;
DT 21-SEP-2011, integrated into UniProtKB/Swiss-Prot.
DT 24-MAY-2005, sequence version 1.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=Chaperone protein ClpC3, chloroplastic;
DE AltName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC homolog 3;
DE AltName: Full=Casein lytic proteinase C3;
DE Flags: Precursor;
GN Name=CLPC3; OrderedLocusNames=Os11g0267400, LOC_Os11g16590;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Molecular chaperone that may interact with a ClpP-like
CC protease involved in degradation of denatured proteins in the
CC chloroplast. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the ClpA/ClpB family. ClpC subfamily.
CC {ECO:0000305}.
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DR EMBL; AC138005; AAX96285.1; -; Genomic_DNA.
DR EMBL; DP000010; ABA92591.1; -; Genomic_DNA.
DR EMBL; AP008217; BAF28034.1; -; Genomic_DNA.
DR EMBL; AP014967; BAT13547.1; -; Genomic_DNA.
DR EMBL; AK100126; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015617923.1; XM_015762437.1.
DR AlphaFoldDB; Q53LY0; -.
DR SMR; Q53LY0; -.
DR STRING; 4530.OS11T0267400-01; -.
DR PaxDb; Q53LY0; -.
DR PRIDE; Q53LY0; -.
DR EnsemblPlants; Os11t0267400-01; Os11t0267400-01; Os11g0267400.
DR GeneID; 4350258; -.
DR Gramene; Os11t0267400-01; Os11t0267400-01; Os11g0267400.
DR KEGG; osa:4350258; -.
DR eggNOG; KOG1051; Eukaryota.
DR HOGENOM; CLU_005070_4_1_1; -.
DR InParanoid; Q53LY0; -.
DR OMA; NYINTEH; -.
DR OrthoDB; 611758at2759; -.
DR Proteomes; UP000000763; Chromosome 11.
DR Proteomes; UP000059680; Chromosome 11.
DR Genevisible; Q53LY0; OS.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR Gene3D; 1.10.1780.10; -; 1.
DR Gene3D; 3.40.50.300; -; 2.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR003959; ATPase_AAA_core.
DR InterPro; IPR019489; Clp_ATPase_C.
DR InterPro; IPR036628; Clp_N_dom_sf.
DR InterPro; IPR004176; Clp_R_dom.
DR InterPro; IPR001270; ClpA/B.
DR InterPro; IPR018368; ClpA/B_CS1.
DR InterPro; IPR028299; ClpA/B_CS2.
DR InterPro; IPR041546; ClpA/ClpB_AAA_lid.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR001943; UVR_dom.
DR Pfam; PF00004; AAA; 1.
DR Pfam; PF07724; AAA_2; 1.
DR Pfam; PF17871; AAA_lid_9; 1.
DR Pfam; PF02861; Clp_N; 2.
DR Pfam; PF10431; ClpB_D2-small; 1.
DR PRINTS; PR00300; CLPPROTEASEA.
DR SMART; SM00382; AAA; 2.
DR SMART; SM01086; ClpB_D2-small; 1.
DR SUPFAM; SSF52540; SSF52540; 2.
DR SUPFAM; SSF81923; SSF81923; 1.
DR PROSITE; PS51903; CLP_R; 1.
DR PROSITE; PS00870; CLPAB_1; 1.
DR PROSITE; PS00871; CLPAB_2; 1.
DR PROSITE; PS50151; UVR; 1.
PE 2: Evidence at transcript level;
KW ATP-binding; Chaperone; Chloroplast; Nucleotide-binding; Plastid;
KW Reference proteome; Repeat; Transit peptide.
FT TRANSIT 1..48
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 49..932
FT /note="Chaperone protein ClpC3, chloroplastic"
FT /id="PRO_0000412581"
FT DOMAIN 99..240
FT /note="Clp R"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01251"
FT DOMAIN 518..553
FT /note="UVR"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00217"
FT REGION 1..20
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 102..167
FT /note="Repeat 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01251"
FT REGION 177..240
FT /note="Repeat 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01251"
FT REGION 264..511
FT /note="I"
FT /evidence="ECO:0000250"
FT REGION 579..770
FT /note="II"
FT /evidence="ECO:0000250"
FT BINDING 309..316
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255"
FT BINDING 653..660
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255"
FT CONFLICT 359
FT /note="E -> G (in Ref. 5; AK100126)"
FT /evidence="ECO:0000305"
FT CONFLICT 790
FT /note="G -> S (in Ref. 5; AK100126)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 932 AA; 100884 MW; CAFAA16DA5ABE0E4 CRC64;
MERTLLNPPP SLRSPACRTT TATRIRPSSS MATMIPTPPP MRHARLVKAS AAGRRELHAP
PIAPPILLGL RSPAAASYGR ASGGGGRRRG ARVVARMGFD MFTDKAIKAI MMAQEEARRL
GHHAAGSEQL LLGVIGEGTG IGAKVLRGAG LSLKAARAEV EKMAGRGPGM VPMEIKFTPA
AKNVLQASQE EAHQLGHNYV GSEHLLLGLL REHGAALVVL KNFQADPSNI RSEVIRMISD
TSEDHQPVSA AVGGGSSTTK IPTLLEYGTN LTKLAEEGKL DPVVGRQNQV DRVVQILGRR
TKNNPCLIGE PGVGKTAIAE GLAQRIAAGN VPETIDGKTV ITLDMGLLVA GTKYRGEFEE
RLKKLMDEVK QNGEIILFLD EVHTLVGAGA AEGAIDAANI LKPALARGEL QCIGATTIDE
YRKHIEKDPA LERRFQPVKV PEPTVDETIG ILKGLRERYE IHHKVQYTDE SLIAAARLSY
QYISDRFLPD KAIDLVDEAG SLVRLRNAQL PDEAKELEKK LKKIMAEKSE AIRSQDFEKA
GALRGEEVEL KSEIMSLVDK SKEMSKAAVD SGESPGPTVT EADVQHIVSS WTGVPVEKVT
VDESSRLLAM ESSLHRRIVG QDEAVTAISR AIRRARVGLR DPRRPIASFI FAGPTGVGKS
ELAKALAAYY YGSPEAMVRL DMSEFMEKHT VAKLVGSPPG YVGYAEGGQL TEAIRRRPYA
VVLFDEVEKA HPDVFNMMLQ ILDDGRLTDS KGRTVDFKNS LIIMTSNVGS GVIEKGGRQL
GFAGDGSGDG GYGVIKNMVE EEMKRYFRPE FLNRLDEMIV FRQLTKLEVK EIAGIMLAEV
TGRIGGKGIG LQVTERFKEL VVEQGFDPSY GARPLRRAIM RLLEDTLTDK MLAGEICAGD
SVIVDADGDG NVVVVGRRSA GLPDLKSPAF TV
