CLPT4_CHLRE
ID CLPT4_CHLRE Reviewed; 244 AA.
AC A8J353;
DT 12-AUG-2020, integrated into UniProtKB/Swiss-Prot.
DT 04-DEC-2007, sequence version 1.
DT 03-AUG-2022, entry version 50.
DE RecName: Full=ATP-dependent Clp protease ATP-binding subunit CLPT4, chloroplastic {ECO:0000305};
DE Flags: Precursor;
GN Name=CLPT4 {ECO:0000303|PubMed:22772861};
GN ORFNames=CHLRE_03g144667v5 {ECO:0000312|EMBL:PNW84426.1},
GN CHLREDRAFT_175283 {ECO:0000312|EMBL:EDP01528.1};
OS Chlamydomonas reinhardtii (Chlamydomonas smithii).
OC Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Chlorophyceae;
OC CS clade; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas.
OX NCBI_TaxID=3055;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CC-503;
RX PubMed=17932292; DOI=10.1126/science.1143609;
RA Merchant S.S., Prochnik S.E., Vallon O., Harris E.H., Karpowicz S.J.,
RA Witman G.B., Terry A., Salamov A., Fritz-Laylin L.K., Marechal-Drouard L.,
RA Marshall W.F., Qu L.H., Nelson D.R., Sanderfoot A.A., Spalding M.H.,
RA Kapitonov V.V., Ren Q., Ferris P., Lindquist E., Shapiro H., Lucas S.M.,
RA Grimwood J., Schmutz J., Cardol P., Cerutti H., Chanfreau G., Chen C.L.,
RA Cognat V., Croft M.T., Dent R., Dutcher S., Fernandez E., Fukuzawa H.,
RA Gonzalez-Ballester D., Gonzalez-Halphen D., Hallmann A., Hanikenne M.,
RA Hippler M., Inwood W., Jabbari K., Kalanon M., Kuras R., Lefebvre P.A.,
RA Lemaire S.D., Lobanov A.V., Lohr M., Manuell A., Meier I., Mets L.,
RA Mittag M., Mittelmeier T., Moroney J.V., Moseley J., Napoli C.,
RA Nedelcu A.M., Niyogi K., Novoselov S.V., Paulsen I.T., Pazour G.J.,
RA Purton S., Ral J.P., Riano-Pachon D.M., Riekhof W., Rymarquis L.,
RA Schroda M., Stern D., Umen J., Willows R., Wilson N., Zimmer S.L.,
RA Allmer J., Balk J., Bisova K., Chen C.J., Elias M., Gendler K., Hauser C.,
RA Lamb M.R., Ledford H., Long J.C., Minagawa J., Page M.D., Pan J.,
RA Pootakham W., Roje S., Rose A., Stahlberg E., Terauchi A.M., Yang P.,
RA Ball S., Bowler C., Dieckmann C.L., Gladyshev V.N., Green P., Jorgensen R.,
RA Mayfield S., Mueller-Roeber B., Rajamani S., Sayre R.T., Brokstein P.,
RA Dubchak I., Goodstein D., Hornick L., Huang Y.W., Jhaveri J., Luo Y.,
RA Martinez D., Ngau W.C., Otillar B., Poliakov A., Porter A., Szajkowski L.,
RA Werner G., Zhou K., Grigoriev I.V., Rokhsar D.S., Grossman A.R.;
RT "The Chlamydomonas genome reveals the evolution of key animal and plant
RT functions.";
RL Science 318:245-250(2007).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=CC-503;
RG Chlamydomonas Annotation Team;
RG JGI Annotation Team;
RA Merchant S.S., Prochnik S.E., Vallon O., Harris E.H., Karpowicz S.J.,
RA Witman G.B., Terry A., Salamov A., Fritz-Laylin L.K., Marechal-Drouard L.,
RA Marshall W.F., Qu L.H., Nelson D.R., Sanderfoot A.A., Spalding M.H.,
RA Kapitonov V.V., Ren Q., Ferris P., Lindquist E., Shapiro H., Lucas S.M.,
RA Grimwood J., Schmutz J., Grigoriev I.V., Rokhsar D.S.;
RT "WGS assembly of Chlamydomonas reinhardtii.";
RL Submitted (JUL-2017) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP PROTEIN SEQUENCE OF 65-71, AND IDENTIFICATION BY MASS SPECTROMETRY.
RX PubMed=22772861; DOI=10.1007/s11103-012-9939-5;
RA Derrien B., Majeran W., Effantin G., Ebenezer J., Friso G., van Wijk K.J.,
RA Steven A.C., Maurizi M.R., Vallon O.;
RT "The purification of the Chlamydomonas reinhardtii chloroplast ClpP
RT complex: additional subunits and structural features.";
RL Plant Mol. Biol. 80:189-202(2012).
CC -!- FUNCTION: Accessory protein regulating the assembly of the plastid Clp
CC protease system. {ECO:0000250|UniProtKB:Q93WL3}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast
CC {ECO:0000250|UniProtKB:Q93WL3}.
CC -!- SIMILARITY: Belongs to the ClpA/ClpB family. {ECO:0000305}.
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DR EMBL; DS496134; EDP01528.1; -; Genomic_DNA.
DR EMBL; CM008964; PNW84426.1; -; Genomic_DNA.
DR RefSeq; XP_001695741.1; XM_001695689.1.
DR PDB; 7EKO; EM; 3.30 A; O=65-244.
DR PDB; 7EKQ; EM; 3.60 A; O=65-244.
DR PDBsum; 7EKO; -.
DR PDBsum; 7EKQ; -.
DR AlphaFoldDB; A8J353; -.
DR SMR; A8J353; -.
DR PaxDb; A8J353; -.
DR PRIDE; A8J353; -.
DR ProMEX; A8J353; -.
DR EnsemblPlants; PNW84426; PNW84426; CHLRE_03g144667v5.
DR GeneID; 5721295; -.
DR Gramene; PNW84426; PNW84426; CHLRE_03g144667v5.
DR KEGG; cre:CHLRE_03g144667v5; -.
DR HOGENOM; CLU_1139429_0_0_1; -.
DR InParanoid; A8J353; -.
DR OMA; KMYSEDV; -.
DR OrthoDB; 1443817at2759; -.
DR Proteomes; UP000006906; Chromosome 3.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR Gene3D; 1.10.1780.10; -; 2.
DR InterPro; IPR036628; Clp_N_dom_sf.
DR SUPFAM; SSF81923; SSF81923; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Chloroplast; Direct protein sequencing; Plastid;
KW Reference proteome; Transit peptide.
FT TRANSIT 1..64
FT /note="Chloroplast"
FT /evidence="ECO:0000269|PubMed:22772861"
FT CHAIN 65..244
FT /note="ATP-dependent Clp protease ATP-binding subunit
FT CLPT4, chloroplastic"
FT /id="PRO_0000450659"
FT REGION 30..55
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 220..244
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT HELIX 66..68
FT /evidence="ECO:0007829|PDB:7EKO"
FT STRAND 69..71
FT /evidence="ECO:0007829|PDB:7EKO"
FT HELIX 72..75
FT /evidence="ECO:0007829|PDB:7EKO"
FT HELIX 81..96
FT /evidence="ECO:0007829|PDB:7EKO"
FT HELIX 104..113
FT /evidence="ECO:0007829|PDB:7EKO"
FT HELIX 118..126
FT /evidence="ECO:0007829|PDB:7EKO"
FT HELIX 131..143
FT /evidence="ECO:0007829|PDB:7EKO"
FT HELIX 161..176
FT /evidence="ECO:0007829|PDB:7EKO"
FT STRAND 180..182
FT /evidence="ECO:0007829|PDB:7EKO"
FT HELIX 184..192
FT /evidence="ECO:0007829|PDB:7EKO"
FT TURN 193..200
FT /evidence="ECO:0007829|PDB:7EKO"
FT HELIX 202..204
FT /evidence="ECO:0007829|PDB:7EKO"
FT HELIX 208..219
FT /evidence="ECO:0007829|PDB:7EKO"
SQ SEQUENCE 244 AA; 26578 MW; C79CC6463CE3C897 CRC64;
MQALQASRLT GQARPCSSSV VPRCSSLHVS RPISSGVSSS QELSSRSSAP ATKSWRSSGR
VITRATATAA PSELDDVGVS AAAESIIQYA INFARASETY EVHSWMVLMG ILKYETCTAA
KILKSLGLED LYGAWNEVLW ALNVCDGLQP RSFVTDIKFA DRAFKVITAA SDFAVWHGKD
KMYSEDVLMA LAAGGVLEDL FPDLNLSFER VRKAVEKESG RRYQLPDETE EAGPLKSEDD
VSFL
