CNIH2_ARATH
ID CNIH2_ARATH Reviewed; 129 AA.
AC Q3EDD7; Q9LNB1;
DT 05-OCT-2010, integrated into UniProtKB/Swiss-Prot.
DT 15-JAN-2008, sequence version 2.
DT 03-AUG-2022, entry version 80.
DE RecName: Full=Probable protein cornichon homolog 2;
GN OrderedLocusNames=At1g12340; ORFNames=F5O11.7;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the cornichon family. {ECO:0000305}.
CC -!- CAUTION: Lacks one of the three transmembrane regions, which are
CC conserved features of the family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF79631.1; Type=Erroneous gene model prediction; Note=The predicted gene has been split into 2 genes: At1g12340 and At1g12350.; Evidence={ECO:0000305};
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DR EMBL; AC025416; AAF79631.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE28868.1; -; Genomic_DNA.
DR RefSeq; NP_563903.2; NM_101106.2.
DR AlphaFoldDB; Q3EDD7; -.
DR SMR; Q3EDD7; -.
DR STRING; 3702.AT1G12340.1; -.
DR PaxDb; Q3EDD7; -.
DR PRIDE; Q3EDD7; -.
DR EnsemblPlants; AT1G12340.1; AT1G12340.1; AT1G12340.
DR GeneID; 837788; -.
DR Gramene; AT1G12340.1; AT1G12340.1; AT1G12340.
DR KEGG; ath:AT1G12340; -.
DR Araport; AT1G12340; -.
DR TAIR; locus:2034655; AT1G12340.
DR eggNOG; KOG2729; Eukaryota.
DR HOGENOM; CLU_112942_3_1_1; -.
DR OMA; HFMSVIV; -.
DR OrthoDB; 1602458at2759; -.
DR PhylomeDB; Q3EDD7; -.
DR PRO; PR:Q3EDD7; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q3EDD7; baseline and differential.
DR Genevisible; Q3EDD7; AT.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0016192; P:vesicle-mediated transport; IEA:InterPro.
DR InterPro; IPR003377; Cornichon.
DR Pfam; PF03311; Cornichon; 1.
DR SMART; SM01398; Cornichon; 1.
PE 2: Evidence at transcript level;
KW Membrane; Reference proteome; Transmembrane; Transmembrane helix.
FT CHAIN 1..129
FT /note="Probable protein cornichon homolog 2"
FT /id="PRO_0000398827"
FT TRANSMEM 45..65
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 105..125
FT /note="Helical"
FT /evidence="ECO:0000255"
SQ SEQUENCE 129 AA; 15379 MW; 2977DF343860B1C1 CRC64;
MRGVTETDKL ANGIFHLVCL ADLEFDYINP YDSASRINSV VLPEFIVQGV LCVFYLLTGH
WFMTLLCLPY LYYNFHLYSK RQHLVDVTEI FNLLNWEKKK RLFKLAYIVL NLFLTIFWMI
YSALDDYED