COAT_TYMV
ID COAT_TYMV Reviewed; 189 AA.
AC P03608;
DT 21-JUL-1986, integrated into UniProtKB/Swiss-Prot.
DT 21-JUL-1986, sequence version 1.
DT 03-AUG-2022, entry version 108.
DE RecName: Full=Coat protein;
DE AltName: Full=Virion protein;
OS Turnip yellow mosaic virus.
OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes;
OC Tymovirales; Tymoviridae; Tymovirus.
OX NCBI_TaxID=12154;
OH NCBI_TaxID=3705; Brassica.
OH NCBI_TaxID=51351; Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis).
OH NCBI_TaxID=82359; Cardamine lilacina.
RN [1]
RP PROTEIN SEQUENCE, AND ACETYLATION AT MET-1.
RA Stehelin D., Peter R., Duranton H.;
RT "Study of the primary structure of the protein from turnip yellow mosaic
RT virus. III. Sequence of the chymotryptic peptides of the aminoethylated
RT protein and of order of the tryptic peptides.";
RL Biochim. Biophys. Acta 317:253-265(1973).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RX PubMed=699035; DOI=10.1016/0092-8674(78)90087-9;
RA Guilley H., Briand J.-P.;
RT "Nucleotide sequence of turnip yellow mosaic virus coat protein mRNA.";
RL Cell 15:113-122(1978).
RN [3]
RP NUCLEOTIDE SEQUENCE [GENOMIC RNA].
RX PubMed=837924; DOI=10.1111/j.1432-1033.1977.tb11269.x;
RA Briand J.-P., Jonard G., Guilley H., Richards K., Hirth L.;
RT "Nucleotide sequence (n=159) of the amino-acid-accepting 3'-OH extremity of
RT turnip-yellow-mosaic-virus RNA and the last portion of its coat-protein
RT cistron.";
RL Eur. J. Biochem. 72:453-463(1977).
RN [4]
RP NUCLEOTIDE SEQUENCE [GENOMIC RNA].
RX PubMed=402264; DOI=10.1111/j.1432-1033.1977.tb11270.x;
RA Silberklang M., Prochiantz A., Haenni A.L., RajBhandary U.L.;
RT "Studies on the sequence of the 3'-terminal region of turnip-yellow-mosaic-
RT virus RNA.";
RL Eur. J. Biochem. 72:465-478(1977).
RN [5]
RP NUCLEOTIDE SEQUENCE [GENOMIC RNA].
RA Morch M.D., Drugeon G., Benicourt C.;
RT "Analysis of the in vitro coding properties of the 3' region of turnip
RT yellow mosaic virus genomic RNA.";
RL Virology 119:193-198(1982).
RN [6]
RP NUCLEOTIDE SEQUENCE [GENOMIC RNA].
RX PubMed=3399388; DOI=10.1093/nar/16.13.6157;
RA Morch M.D., Boyer J.C., Haenni A.L.;
RT "Overlapping open reading frames revealed by complete nucleotide sequencing
RT of turnip yellow mosaic virus genomic RNA.";
RL Nucleic Acids Res. 16:6157-6173(1988).
RN [7]
RP NUCLEOTIDE SEQUENCE [GENOMIC RNA].
RC STRAIN=Isolate TYMC;
RX PubMed=1731998; DOI=10.1007/bf00034967;
RA Dreher T.W., Bransom K.L.;
RT "Genomic RNA sequence of turnip yellow mosaic virus isolate TYMC, a cDNA-
RT based clone with verified infectivity.";
RL Plant Mol. Biol. 18:403-406(1992).
RN [8]
RP X-RAY CRYSTALLOGRAPHY (3.2 ANGSTROMS).
RX PubMed=8784351; DOI=10.1038/nsb0996-771;
RA Canady M.A., Larson S.B., Day J., McPherson A.;
RT "Crystal structure of turnip yellow mosaic virus.";
RL Nat. Struct. Biol. 3:771-781(1996).
CC -!- SUBUNIT: The virus coat is composed of 180 copies of the coat protein
CC arranged in an icosahedral shell.
CC -!- SUBCELLULAR LOCATION: Virion {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the tymoviruses coat protein family.
CC {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Virus Particle ExploreR db; Note=Icosahedral capsid
CC structure;
CC URL="https://viperdb.scripps.edu/Info_Page.php?VDB=1auy";
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DR EMBL; V01418; CAA24690.1; -; mRNA.
DR EMBL; K00602; AAA46590.1; -; Genomic_RNA.
DR EMBL; X07441; CAA30323.1; -; Genomic_RNA.
DR EMBL; X16378; CAA34416.1; -; Genomic_RNA.
DR EMBL; M54918; AAA46604.1; -; Genomic_RNA.
DR PIR; S19153; VCTY.
DR RefSeq; NP_663298.1; NC_004063.1.
DR PDB; 1AUY; X-ray; 3.00 A; A/B/C=1-189.
DR PDB; 1W39; X-ray; 3.75 A; A/B/C=1-189.
DR PDBsum; 1AUY; -.
DR PDBsum; 1W39; -.
DR SMR; P03608; -.
DR GeneID; 951157; -.
DR KEGG; vg:951157; -.
DR EvolutionaryTrace; P03608; -.
DR Proteomes; UP000000401; Genome.
DR GO; GO:0039617; C:T=3 icosahedral viral capsid; IEA:UniProtKB-KW.
DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR Gene3D; 2.60.120.20; -; 1.
DR InterPro; IPR000574; Tymo_coat.
DR InterPro; IPR029053; Viral_coat.
DR Pfam; PF00983; Tymo_coat; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Acetylation; Capsid protein; Direct protein sequencing;
KW Reference proteome; T=3 icosahedral capsid protein; Virion.
FT CHAIN 1..189
FT /note="Coat protein"
FT /id="PRO_0000222931"
FT MOD_RES 1
FT /note="N-acetylmethionine; by host"
FT /evidence="ECO:0000269|Ref.1"
FT CONFLICT 86
FT /note="T -> A (in Ref. 6; CAA30323)"
FT /evidence="ECO:0000305"
FT STRAND 24..26
FT /evidence="ECO:0007829|PDB:1AUY"
FT STRAND 30..45
FT /evidence="ECO:0007829|PDB:1AUY"
FT STRAND 47..52
FT /evidence="ECO:0007829|PDB:1AUY"
FT HELIX 53..55
FT /evidence="ECO:0007829|PDB:1AUY"
FT HELIX 57..63
FT /evidence="ECO:0007829|PDB:1AUY"
FT STRAND 66..80
FT /evidence="ECO:0007829|PDB:1AUY"
FT HELIX 83..86
FT /evidence="ECO:0007829|PDB:1AUY"
FT STRAND 89..97
FT /evidence="ECO:0007829|PDB:1AUY"
FT HELIX 104..109
FT /evidence="ECO:0007829|PDB:1AUY"
FT STRAND 110..112
FT /evidence="ECO:0007829|PDB:1AUY"
FT STRAND 114..118
FT /evidence="ECO:0007829|PDB:1AUY"
FT STRAND 129..131
FT /evidence="ECO:0007829|PDB:1AUY"
FT HELIX 134..136
FT /evidence="ECO:0007829|PDB:1AUY"
FT STRAND 140..142
FT /evidence="ECO:0007829|PDB:1AUY"
FT STRAND 151..158
FT /evidence="ECO:0007829|PDB:1AUY"
FT STRAND 168..182
FT /evidence="ECO:0007829|PDB:1AUY"
SQ SEQUENCE 189 AA; 20088 MW; 082F7EF9307554BC CRC64;
MEIDKELAPQ DRTVTVATVL PAVPGPSPLT IKQPFQSEVL FAGTKDAEAS LTIANIDSVS
TLTTFYRHAS LESLWVTIHP TLQAPTFPTT VGVCWVPANS PVTPAQITKT YGGQIFCIGG
AINTLSPLIV KCPLEMMNPR VKDSIQYLDS PKLLISITAQ PTAPPASTCI ITVSGTLSMH
SPLITDTST
