COB23_ORYSJ
ID COB23_ORYSJ Reviewed; 910 AA.
AC Q6H8D6; Q0E2W1;
DT 01-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2007, sequence version 2.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=Putative coatomer subunit beta'-3;
DE AltName: Full=Beta'-coat protein 3;
DE Short=Beta'-COP 3;
GN OrderedLocusNames=Os02g0209000, LOC_Os02g11830; ORFNames=OJ1006_A02.22;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
CC -!- FUNCTION: The coatomer is a cytosolic protein complex that binds to
CC dilysine motifs and reversibly associates with Golgi non-clathrin-
CC coated vesicles, which further mediate biosynthetic protein transport
CC from the ER, via the Golgi up to the trans Golgi network. Coatomer
CC complex is required for budding from Golgi membranes, and is essential
CC for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
CC (By similarity). {ECO:0000250}.
CC -!- SUBUNIT: Oligomeric complex that consists of at least the alpha, beta,
CC beta', gamma, delta, epsilon and zeta subunits. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. Golgi apparatus membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}; Cytoplasmic
CC side {ECO:0000250}. Cytoplasmic vesicle, COPI-coated vesicle membrane
CC {ECO:0000250}; Peripheral membrane protein {ECO:0000250}; Cytoplasmic
CC side {ECO:0000250}. Note=The coatomer is cytoplasmic or polymerized on
CC the cytoplasmic side of the Golgi, as well as on the vesicles/buds
CC originating from it. {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the WD repeat COPB2 family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAD25013.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF08177.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP003977; BAD25013.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008208; BAF08177.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014958; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR AlphaFoldDB; Q6H8D6; -.
DR SMR; Q6H8D6; -.
DR STRING; 4530.OS02T0209000-01; -.
DR PaxDb; Q6H8D6; -.
DR PRIDE; Q6H8D6; -.
DR eggNOG; KOG0276; Eukaryota.
DR InParanoid; Q6H8D6; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR GO; GO:0030126; C:COPI vesicle coat; IBA:GO_Central.
DR GO; GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR GO; GO:0006888; P:endoplasmic reticulum to Golgi vesicle-mediated transport; IBA:GO_Central.
DR GO; GO:0006891; P:intra-Golgi vesicle-mediated transport; IBA:GO_Central.
DR GO; GO:0006886; P:intracellular protein transport; IBA:GO_Central.
DR GO; GO:0006890; P:retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum; IBA:GO_Central.
DR Gene3D; 2.130.10.10; -; 1.
DR InterPro; IPR006692; Coatomer_WD-assoc_reg.
DR InterPro; IPR016453; COPB2.
DR InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR InterPro; IPR011048; Haem_d1_sf.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR001680; WD40_repeat.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR Pfam; PF04053; Coatomer_WDAD; 1.
DR Pfam; PF00400; WD40; 4.
DR PIRSF; PIRSF005567; Coatomer_beta'_subunit; 1.
DR PRINTS; PR00320; GPROTEINBRPT.
DR SMART; SM00320; WD40; 6.
DR SUPFAM; SSF50978; SSF50978; 1.
DR SUPFAM; SSF51004; SSF51004; 1.
DR PROSITE; PS50082; WD_REPEATS_2; 4.
DR PROSITE; PS50294; WD_REPEATS_REGION; 1.
PE 3: Inferred from homology;
KW Cytoplasm; Cytoplasmic vesicle; ER-Golgi transport; Golgi apparatus;
KW Membrane; Protein transport; Reference proteome; Repeat; Transport;
KW WD repeat.
FT CHAIN 1..910
FT /note="Putative coatomer subunit beta'-3"
FT /id="PRO_0000285609"
FT REPEAT 13..52
FT /note="WD 1"
FT REPEAT 55..94
FT /note="WD 2"
FT REPEAT 97..136
FT /note="WD 3"
FT REPEAT 140..180
FT /note="WD 4"
FT REPEAT 183..224
FT /note="WD 5"
FT REPEAT 227..266
FT /note="WD 6"
FT REPEAT 269..309
FT /note="WD 7"
FT REPEAT 351..393
FT /note="WD 8"
FT REPEAT 461..501
FT /note="WD 9"
FT REGION 865..910
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 867..881
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 888..910
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 910 AA; 102837 MW; 0BA909964398FABC CRC64;
MPLRLDIKRK LAQRSERAKS VDLHPTEPWI LSSLYSGSVC IWNYQTQTMV KSFEVTELPV
RSSKFITRKQ WVVAGADDMF IRVYNYNTMD KVKVFEAHTD YIRCVAVHPT QPFVLSSSDD
MLIKLWDWDK GWMCTQIFEG HSHYVMQVTF NPKDTNTFAS ASLDRTVKVW SLGSPDPNFT
LDGHSKGVNC VDYFTGGDRP YLITGSDDQT AKVWDYQTKS CVQTLEGHAH NVSAVCFHPE
LPIILTGSED GTVRLWHSTT YRLENTLNYG LERVWALGYM KGSRRVVIGY DEGTIMIKIG
REVPVASMDS SGKIIWSKHN EIQTVNIKTI GADNEIADGE RLPLVVKELG TCDLYPQSLR
HNPNGRFVVV CGDGEYIIYT ALAWRNRSFG SALEFVWSLD GEYAVRESTS RIKIYSKNFQ
ERKSIRPPFS AERIFGGVLL AMCTNDFICF HDWAEGRMIR RIDVNVKNLY WADSGDLVTI
ASDTSFYILK YNRDVVSSHL DGGGSVGEEG VEDAFELLHE INERIRTGLW VGDCFIYNNS
SSRLNYCVGG EVTTLFHLDR QMYLLGYLAN QSRVYLIDKQ FNVVGYTLLL TMIEYKTLVM
RGDFDRANAL LPSIPKEQHD SVARFLESRG MLEEALEIAT DSNYRFDLAV QLGRLEVAKA
IAIEAQSESK WRQLGELAMS TGKLDMAEEC LLHAMDLSGL LLLYSSLGDA EGLTKLTSMA
KEQGKNNVAF LCFFMLGKLE ECLQLLIESN RIPEAALMSR SYLPSKVPEI VTLWKKDLQK
VNPKAAESLA DPNEYPNLFE DWQIALNVEA NVAPKRGIYA PAKEYIIHAE RPNETLVEAF
KNMRIHQEEV LPDENGDDTH EAIEENGVEE SQEDAVEVDV EADGSTDGTV LVNGNDTEEQ
WGTNNEESLA
