COBL1_ORYSJ
ID COBL1_ORYSJ Reviewed; 446 AA.
AC Q6Z4G8; A3BLZ1; Q0D4U0;
DT 25-JUL-2006, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 97.
DE RecName: Full=COBRA-like protein 1;
DE AltName: Full=Protein BRITTLE CULM1-like 6;
DE Flags: Precursor;
GN Name=BC1L6; OrderedLocusNames=Os07g0604300, LOC_Os07g41310;
GN ORFNames=OsJ_25037 {ECO:0000312|EMBL:EAZ40580.1}, OSJNBb0040H10.12;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP IDENTIFICATION, AND NOMENCLATURE.
RX PubMed=12953108; DOI=10.1105/tpc.011775;
RA Li Y., Qian Q., Zhou Y., Yan M., Sun L., Zhang M., Fu Z., Wang Y., Han B.,
RA Pang X., Chen M., Li J.;
RT "BRITTLE CULM1, which encodes a COBRA-like protein, affects the mechanical
RT properties of rice plants.";
RL Plant Cell 15:2020-2031(2003).
CC -!- FUNCTION: Involved in determining the orientation of cell expansion,
CC probably by playing an important role in cellulose deposition. May act
CC by recruiting cellulose synthesizing complexes to discrete positions on
CC the cell surface (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Lipid-anchor, GPI-
CC anchor {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the COBRA family. {ECO:0000305}.
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DR EMBL; AP005175; BAC83872.1; -; Genomic_DNA.
DR EMBL; AP008213; BAF22133.2; -; Genomic_DNA.
DR EMBL; AP014963; BAT02549.1; -; Genomic_DNA.
DR EMBL; CM000144; EAZ40580.1; -; Genomic_DNA.
DR EMBL; AK101860; BAG95261.1; -; mRNA.
DR EMBL; AK121884; BAH00705.1; -; mRNA.
DR RefSeq; XP_015646930.1; XM_015791444.1.
DR AlphaFoldDB; Q6Z4G8; -.
DR STRING; 4530.OS07T0604300-01; -.
DR PaxDb; Q6Z4G8; -.
DR PRIDE; Q6Z4G8; -.
DR EnsemblPlants; Os07t0604300-01; Os07t0604300-01; Os07g0604300.
DR GeneID; 4343844; -.
DR Gramene; Os07t0604300-01; Os07t0604300-01; Os07g0604300.
DR KEGG; osa:4343844; -.
DR eggNOG; ENOG502QTGW; Eukaryota.
DR HOGENOM; CLU_038120_0_0_1; -.
DR InParanoid; Q6Z4G8; -.
DR OMA; IIWAMNG; -.
DR OrthoDB; 494933at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000007752; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR Genevisible; Q6Z4G8; OS.
DR GO; GO:0046658; C:anchored component of plasma membrane; IBA:GO_Central.
DR GO; GO:0010215; P:cellulose microfibril organization; IEA:InterPro.
DR GO; GO:0052324; P:plant-type cell wall cellulose biosynthetic process; IBA:GO_Central.
DR InterPro; IPR006918; COBRA_pln.
DR PANTHER; PTHR31673; PTHR31673; 1.
DR Pfam; PF04833; COBRA; 1.
DR PIRSF; PIRSF038122; COBRA; 1.
PE 2: Evidence at transcript level;
KW Cell membrane; Glycoprotein; GPI-anchor; Lipoprotein; Membrane;
KW Reference proteome; Signal.
FT SIGNAL 1..28
FT /evidence="ECO:0000255"
FT CHAIN 29..420
FT /note="COBRA-like protein 1"
FT /id="PRO_0000247629"
FT PROPEP 421..446
FT /note="Removed in mature form"
FT /evidence="ECO:0000255"
FT /id="PRO_0000247630"
FT LIPID 420
FT /note="GPI-anchor amidated alanine"
FT /evidence="ECO:0000255"
FT CARBOHYD 37
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 162
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 170
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 209
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 234
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 316
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 331
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 350
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 419
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
SQ SEQUENCE 446 AA; 50135 MW; 7518B449999D5518 CRC64;
MALLLLRMGV SVALLVAFFS SLIPSSEAYD PLDPNGNITI KWDVLQWTPD GYVAVVSLYN
YQQYRHIQSP GWKLGWVWAK KEIIWAMNGG QATEQGDCSK FKSNIPHCCK KDPEIVDLLP
GTPYNMQIAN CCKGGVLNSW AQDPANAIAS FQVSVGQAGT TNKTVRVPRN FTLKSPGPGY
TCGSAKVVRP TKFFSQDGRR TTQAHMTWNV TCTYSQIVAQ RSPTCCVSLS SFYNDTIVNC
PTCSCGCQNN KPGSCVEGNS PYLASVVNTH NKDSLTPLVQ CTSHMCPIRV HWHVKVNYKE
YWRVKITVTN FNYRMNYSQW NLVTQHPSFD NLTTIFSFNY KSLNPYGVIN DTAMLWGIKY
YNDLLMTAGP DGNVQSELLF KKDPKSFTFE KGWAFPRRVY FNGDNCVMPP PDAYPWLPNA
STRVMSSILL PFITIWTALT FLMVYA
