COBL2_ORYSJ
ID COBL2_ORYSJ Reviewed; 458 AA.
AC Q75IW1; Q10JL0;
DT 25-JUL-2006, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 87.
DE RecName: Full=COBRA-like protein 2;
DE AltName: Full=Protein BRITTLE CULM1-like 2;
DE Flags: Precursor;
GN Name=BC1L2; OrderedLocusNames=Os03g0416300, LOC_Os03g30260;
GN ORFNames=OsJ_11271 {ECO:0000312|EMBL:EEE59257.1}, OSJNBb0059G13.19;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP IDENTIFICATION, AND NOMENCLATURE.
RX PubMed=12953108; DOI=10.1105/tpc.011775;
RA Li Y., Qian Q., Zhou Y., Yan M., Sun L., Zhang M., Fu Z., Wang Y., Han B.,
RA Pang X., Chen M., Li J.;
RT "BRITTLE CULM1, which encodes a COBRA-like protein, affects the mechanical
RT properties of rice plants.";
RL Plant Cell 15:2020-2031(2003).
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Single-pass membrane
CC protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the COBRA family. {ECO:0000305}.
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DR EMBL; AC120538; AAS07075.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF96618.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF12281.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS84704.1; -; Genomic_DNA.
DR EMBL; CM000140; EEE59257.1; -; Genomic_DNA.
DR EMBL; AK103650; BAG96187.1; -; mRNA.
DR RefSeq; XP_015633141.1; XM_015777655.1.
DR AlphaFoldDB; Q75IW1; -.
DR STRING; 4530.OS03T0416300-01; -.
DR PaxDb; Q75IW1; -.
DR PRIDE; Q75IW1; -.
DR EnsemblPlants; Os03t0416300-01; Os03t0416300-01; Os03g0416300.
DR GeneID; 4333115; -.
DR Gramene; Os03t0416300-01; Os03t0416300-01; Os03g0416300.
DR KEGG; osa:4333115; -.
DR eggNOG; ENOG502QTGW; Eukaryota.
DR HOGENOM; CLU_038120_0_0_1; -.
DR InParanoid; Q75IW1; -.
DR OMA; IYNYQKY; -.
DR OrthoDB; 494933at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR ExpressionAtlas; Q75IW1; baseline and differential.
DR Genevisible; Q75IW1; OS.
DR GO; GO:0046658; C:anchored component of plasma membrane; IBA:GO_Central.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0010215; P:cellulose microfibril organization; IEA:InterPro.
DR GO; GO:0052324; P:plant-type cell wall cellulose biosynthetic process; IBA:GO_Central.
DR InterPro; IPR006918; COBRA_pln.
DR PANTHER; PTHR31673; PTHR31673; 1.
DR Pfam; PF04833; COBRA; 1.
DR PIRSF; PIRSF038122; COBRA; 1.
PE 2: Evidence at transcript level;
KW Glycoprotein; Membrane; Reference proteome; Signal; Transmembrane;
KW Transmembrane helix.
FT SIGNAL 1..29
FT /evidence="ECO:0000255"
FT CHAIN 30..458
FT /note="COBRA-like protein 2"
FT /id="PRO_0000247631"
FT TRANSMEM 430..450
FT /note="Helical"
FT /evidence="ECO:0000255"
FT CARBOHYD 38
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 163
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 171
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 211
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 236
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 318
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 333
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 352
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
SQ SEQUENCE 458 AA; 51107 MW; 443A21E8F579CF8C CRC64;
MARFLLGAAA IALLAGVSSL LLMVPFAEAY DPLDPNGNIT IKWDITQWTP DGYVAVVTIY
NFQKYRHIQA PGWSLGWAWA KKEIIWSMAG GQATEQGDCS AFKANIPHCC KRDPRVVDLV
PGAPYNMQFG NCCKGGVLTS WVQDPLNAVA SFQITVGHSG TSNKTVKAPK NFTLKAPGPG
YSCGLAQEVK PPTRFISLDG RRTTQAHVTW NVTCTYSQFV AQRAPTCCVS LSSFYNETIV
NCPKCACGCQ NKKPGSCVEG NSPYLASVVN GPGKGSLTPL VQCTPHMCPI RVHWHVKLNY
RDYWRVKVTI TNWNYRMNYS QWNLVVQHPN FENVSTVFSF NYKSLNPYGV INDTAMMWGV
KYYNDLLMVA GPDGNVQSEL LFRKDRSTFT FDKGWAFPRR IYFNGESCVM PSPDLYPWLP
PSSTPRFRTV FLLMSFLVCG TLAFLHNHLV LDKNCGKC
