COBL3_ORYSJ
ID COBL3_ORYSJ Reviewed; 457 AA.
AC Q60E70; Q0DIJ0;
DT 25-JUL-2006, integrated into UniProtKB/Swiss-Prot.
DT 23-NOV-2004, sequence version 1.
DT 03-AUG-2022, entry version 91.
DE RecName: Full=COBRA-like protein 3;
DE AltName: Full=Protein BRITTLE CULM1-like 4;
DE Flags: Precursor;
GN Name=BC1L4; OrderedLocusNames=Os05g0386800, LOC_Os05g32110;
GN ORFNames=OSJNBa0073E05.6;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP IDENTIFICATION, AND NOMENCLATURE.
RX PubMed=12953108; DOI=10.1105/tpc.011775;
RA Li Y., Qian Q., Zhou Y., Yan M., Sun L., Zhang M., Fu Z., Wang Y., Han B.,
RA Pang X., Chen M., Li J.;
RT "BRITTLE CULM1, which encodes a COBRA-like protein, affects the mechanical
RT properties of rice plants.";
RL Plant Cell 15:2020-2031(2003).
CC -!- FUNCTION: Involved in determining the orientation of cell expansion,
CC probably by playing an important role in cellulose deposition. May act
CC by recruiting cellulose synthesizing complexes to discrete positions on
CC the cell surface (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Lipid-anchor, GPI-
CC anchor {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the COBRA family. {ECO:0000305}.
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DR EMBL; AC136219; AAV31332.1; -; Genomic_DNA.
DR EMBL; AP008211; BAF17333.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS93810.1; -; Genomic_DNA.
DR EMBL; AK060897; BAG87603.1; -; mRNA.
DR EMBL; AK070472; -; NOT_ANNOTATED_CDS; mRNA.
DR AlphaFoldDB; Q60E70; -.
DR STRING; 4530.OS05T0386800-01; -.
DR PaxDb; Q60E70; -.
DR PRIDE; Q60E70; -.
DR EnsemblPlants; Os05t0386800-01; Os05t0386800-01; Os05g0386800.
DR EnsemblPlants; Os05t0386800-02; Os05t0386800-02; Os05g0386800.
DR Gramene; Os05t0386800-01; Os05t0386800-01; Os05g0386800.
DR Gramene; Os05t0386800-02; Os05t0386800-02; Os05g0386800.
DR eggNOG; ENOG502QTGW; Eukaryota.
DR HOGENOM; CLU_038120_0_0_1; -.
DR InParanoid; Q60E70; -.
DR OMA; IVFLWAY; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR ExpressionAtlas; Q60E70; baseline and differential.
DR Genevisible; Q60E70; OS.
DR GO; GO:0046658; C:anchored component of plasma membrane; IBA:GO_Central.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0010215; P:cellulose microfibril organization; IEA:InterPro.
DR GO; GO:0052324; P:plant-type cell wall cellulose biosynthetic process; IBA:GO_Central.
DR InterPro; IPR006918; COBRA_pln.
DR PANTHER; PTHR31673; PTHR31673; 1.
DR Pfam; PF04833; COBRA; 1.
DR PIRSF; PIRSF038122; COBRA; 1.
PE 2: Evidence at transcript level;
KW Cell membrane; Glycoprotein; GPI-anchor; Lipoprotein; Membrane;
KW Reference proteome; Signal; Transmembrane; Transmembrane helix.
FT SIGNAL 1..35
FT /evidence="ECO:0000255"
FT CHAIN 36..430
FT /note="COBRA-like protein 3"
FT /id="PRO_0000247632"
FT PROPEP 431..457
FT /note="Removed in mature form"
FT /evidence="ECO:0000255"
FT /id="PRO_0000247633"
FT TRANSMEM 437..457
FT /note="Helical"
FT /evidence="ECO:0000255"
FT LIPID 430
FT /note="GPI-anchor amidated asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 45
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 170
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 178
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 217
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 242
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 258
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 326
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 341
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 361
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CONFLICT 384
FT /note="N -> D (in Ref. 5; AK070472)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 457 AA; 50443 MW; 3799734AD8AB4F15 CRC64;
MAVGGAGSSR SVAPCCCCAV LLAAALLFSA PATTEAYDAL DPNGNITIKW DVMSWTPDGY
VAVVTMFNYQ QFRHIQAPGW QLGWTWAKKE VIWSMVGAQT TEQGDCSKFK GGTPHCCKKD
PTVVDLLPGT PYNMQIANCC KAGVINTFNQ DPSNAASSFQ ISVGLAGTTN KTVKLPKNFT
LKAPGPGYTC GRAMIVRPTK FFTGDGRRAT QALMTWNVTC TYSQFLAQKT PSCCVSLSSF
YNDTIVNCPT CSCGCQNNGT SPGSCVNENS PYLQSAIDGP GKWTGQPLVQ CTSHMCPIRI
HWHVKLNYKE YWRVKITITN FNYRMNYTQW NLVAQHPNFN NITQLFSFNY KPLTPYGSKI
NDTAMFWGVK FYNDLLMQAG PLGNAQSELL LRKDSKDFTF DKGWAFPHRV YFNGDNCVMP
PPDAYPWLPN ASPLTKQPLT LSVLVFSIVL ATLLAYA
