COBL5_ORYSJ
ID COBL5_ORYSJ Reviewed; 468 AA.
AC Q10JL1; A3AJ39; B7EGM8; Q6VSV0; Q6VSV1;
DT 10-JUL-2007, integrated into UniProtKB/Swiss-Prot.
DT 22-AUG-2006, sequence version 1.
DT 03-AUG-2022, entry version 96.
DE RecName: Full=COBRA-like protein 5;
DE AltName: Full=Protein BRITTLE CULM1;
DE Flags: Precursor;
GN Name=BC1; OrderedLocusNames=Os03g0416200, LOC_Os03g30250;
GN ORFNames=OsJ_010811, OSJNBb0059G13.18;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, AND TISSUE SPECIFICITY.
RC STRAIN=cv. C-Bao;
RX PubMed=12953108; DOI=10.1105/tpc.011775;
RA Li Y., Qian Q., Zhou Y., Yan M., Sun L., Zhang M., Fu Z., Wang Y., Han B.,
RA Pang X., Chen M., Li J.;
RT "BRITTLE CULM1, which encodes a COBRA-like protein, affects the mechanical
RT properties of rice plants.";
RL Plant Cell 15:2020-2031(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Involved in determining the orientation of cell expansion,
CC probably by playing an important role in cellulose deposition. May act
CC by recruiting cellulose synthesizing complexes to discrete positions on
CC the cell surface. {ECO:0000269|PubMed:12953108}.
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Lipid-anchor, GPI-
CC anchor {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed mainly in developing sclerenchyma cells
CC and in vascular bundles. {ECO:0000269|PubMed:12953108}.
CC -!- SIMILARITY: Belongs to the COBRA family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=EAZ27328.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AY328909; AAQ56120.1; -; Genomic_DNA.
DR EMBL; AC120538; AAS07098.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF96617.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF12280.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS84702.1; -; Genomic_DNA.
DR EMBL; CM000140; EAZ27328.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AK069631; BAG91525.1; -; mRNA.
DR RefSeq; XP_015633140.1; XM_015777654.1.
DR AlphaFoldDB; Q10JL1; -.
DR STRING; 4530.OS03T0416200-01; -.
DR PaxDb; Q10JL1; -.
DR PRIDE; Q10JL1; -.
DR EnsemblPlants; Os03t0416200-01; Os03t0416200-01; Os03g0416200.
DR EnsemblPlants; Os03t0416200-02; Os03t0416200-02; Os03g0416200.
DR GeneID; 4333114; -.
DR Gramene; Os03t0416200-01; Os03t0416200-01; Os03g0416200.
DR Gramene; Os03t0416200-02; Os03t0416200-02; Os03g0416200.
DR KEGG; osa:4333114; -.
DR eggNOG; ENOG502QQYT; Eukaryota.
DR HOGENOM; CLU_038120_0_0_1; -.
DR InParanoid; Q10JL1; -.
DR OMA; CPNCACG; -.
DR OrthoDB; 623715at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q10JL1; OS.
DR GO; GO:0046658; C:anchored component of plasma membrane; IBA:GO_Central.
DR GO; GO:0010215; P:cellulose microfibril organization; IEA:InterPro.
DR GO; GO:0052324; P:plant-type cell wall cellulose biosynthetic process; IBA:GO_Central.
DR InterPro; IPR006918; COBRA_pln.
DR PANTHER; PTHR31673; PTHR31673; 1.
DR Pfam; PF04833; COBRA; 1.
DR PIRSF; PIRSF038122; COBRA; 1.
PE 2: Evidence at transcript level;
KW Cell membrane; Glycoprotein; GPI-anchor; Lipoprotein; Membrane;
KW Reference proteome; Signal.
FT SIGNAL 1..22
FT /evidence="ECO:0000255"
FT CHAIN 23..443
FT /note="COBRA-like protein 5"
FT /id="PRO_0000247635"
FT PROPEP 444..468
FT /note="Removed in mature form"
FT /evidence="ECO:0000255"
FT /id="PRO_0000247636"
FT REGION 251..278
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT LIPID 443
FT /note="GPI-anchor amidated asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 31
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 156
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 164
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 228
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 340
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 355
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 374
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
SQ SEQUENCE 468 AA; 50960 MW; 1663109DFAD5ED04 CRC64;
MELHRCSLLA LLLAVTCSVA VAYDPLDPKG NITIKWDVIS WTPDGYVAMV TMSNYQMYRQ
ILAPGWTVGW SWAKKEVIWS IVGAQATEQG DCSKFKGGIP HSCKRTPAIV DLLPGVPYNQ
QIANCCKAGV VSAYGQDPAG SVSAFQVSVG LAGTTNKTVK LPTNFTLAGP GPGYTCGPAT
IVPSTVYLTP DRRRRTQALM TWTVTCTYSQ QLASRYPTCC VSFSSFYNST IVPCARCACG
CGHDGYRGNG GGGKNARAGD GRSRRNSGGG GGHSGGTECI MGDSKRALSA GVNTPRKDGA
PLLQCTSHMC PIRVHWHVKL NYKDYWRAKI AITNFNYRMN YTQWTLVAQH PNLNNVTEVF
SFQYKPLLPY GNINDTGMFY GLKFYNDLLM EAGPFGNVQS EVLMRKDYNT FTFSQGWAFP
RKIYFNGDEC KMPPPDSYPY LPNSAPIGPP RSVAAAASAI LVVLLLVA
