COBL6_ARATH
ID COBL6_ARATH Reviewed; 454 AA.
AC O04500;
DT 22-AUG-2003, integrated into UniProtKB/Swiss-Prot.
DT 22-AUG-2003, sequence version 2.
DT 25-MAY-2022, entry version 117.
DE RecName: Full=COBRA-like protein 6;
DE Flags: Precursor;
GN Name=COBL6; OrderedLocusNames=At1g09790; ORFNames=F21M12.17, F21M12_18;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP CONCEPTUAL TRANSLATION.
RA Haas B.;
RL Unpublished observations (JUL-2003).
RN [4]
RP TISSUE SPECIFICITY.
RX PubMed=12376623; DOI=10.1104/pp.007468;
RA Roudier F., Schindelman G., DeSalle R., Benfey P.N.;
RT "The COBRA family of putative GPI-anchored proteins in Arabidopsis. A new
RT fellowship in expansion.";
RL Plant Physiol. 130:538-548(2002).
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Lipid-anchor, GPI-
CC anchor {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in flowers and siliques.
CC {ECO:0000269|PubMed:12376623}.
CC -!- SIMILARITY: Belongs to the COBRA family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAB60732.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC000132; AAB60732.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE28492.1; -; Genomic_DNA.
DR PIR; H86231; H86231.
DR RefSeq; NP_172450.2; NM_100851.2.
DR AlphaFoldDB; O04500; -.
DR STRING; 3702.AT1G09790.1; -.
DR PaxDb; O04500; -.
DR ProteomicsDB; 241138; -.
DR EnsemblPlants; AT1G09790.1; AT1G09790.1; AT1G09790.
DR GeneID; 837508; -.
DR Gramene; AT1G09790.1; AT1G09790.1; AT1G09790.
DR KEGG; ath:AT1G09790; -.
DR Araport; AT1G09790; -.
DR TAIR; locus:2024377; AT1G09790.
DR eggNOG; ENOG502QT9D; Eukaryota.
DR HOGENOM; CLU_038120_0_0_1; -.
DR InParanoid; O04500; -.
DR OrthoDB; 494933at2759; -.
DR PhylomeDB; O04500; -.
DR PRO; PR:O04500; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; O04500; baseline and differential.
DR Genevisible; O04500; AT.
DR GO; GO:0031225; C:anchored component of membrane; TAS:TAIR.
DR GO; GO:0046658; C:anchored component of plasma membrane; IBA:GO_Central.
DR GO; GO:0010215; P:cellulose microfibril organization; IEA:InterPro.
DR GO; GO:0052324; P:plant-type cell wall cellulose biosynthetic process; IBA:GO_Central.
DR InterPro; IPR006918; COBRA_pln.
DR PANTHER; PTHR31673; PTHR31673; 1.
DR Pfam; PF04833; COBRA; 1.
DR PIRSF; PIRSF038122; COBRA; 1.
PE 2: Evidence at transcript level;
KW Cell membrane; Glycoprotein; GPI-anchor; Lipoprotein; Membrane;
KW Reference proteome; Signal.
FT SIGNAL 1..24
FT /evidence="ECO:0000255"
FT CHAIN 25..429
FT /note="COBRA-like protein 6"
FT /id="PRO_0000005579"
FT PROPEP 430..454
FT /note="Removed in mature form"
FT /evidence="ECO:0000255"
FT /id="PRO_0000005580"
FT LIPID 429
FT /note="GPI-anchor amidated serine"
FT /evidence="ECO:0000255"
FT CARBOHYD 104
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 191
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 320
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 355
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 391
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
SQ SEQUENCE 454 AA; 50954 MW; 163BD35FA7EB65B4 CRC64;
MGAMLNLLLV VTVILCSILS PTRFMIMIDK MVADGYDPLD PFGKIIIKWD LLLSSPGQHH
VQVTLENMQE YRHVEKPGWK LSWHWLNQEV IWDMKGAETT EQGNCSAFAS SGNLPHCCLE
RPTIVDLLPG ASLNVQVANC CRGGVLTSMS QDHANHVSAF HMTVGSSPDG PEEFNMPSNF
DIGVPGYSCD NATSVSPTKF STDKGRRKTQ ALATWEAVCV YSQFRSSPSP KCCVSLSAFY
YQNIVPCPTC SCGCSSSHCV KDGELPPYLE QKHDPDEEVS PVVKCSDHMC PIRIHWHVKV
NYREYWRVKI TATNFNTMKN YTNWNLVVLH PNLKSVQQVF SFNYKSLTPY QNSINDTGMF
WGVQFYNDVL LQEGKIGNVQ TELLLKKDMG NFTFREGWAF PRRILFNGDE CVMPSPDDFP
RLPKSAHSSS SSSAVISSVS VVFCFLLHHL LLLV
