COBL6_ORYSJ
ID COBL6_ORYSJ Reviewed; 451 AA.
AC Q6Z4G7; A3BLZ2;
DT 25-JUL-2006, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 83.
DE RecName: Full=COBRA-like protein 6;
DE AltName: Full=Protein BRITTLE CULM1-like 7;
DE Flags: Precursor;
GN Name=BC1L7; OrderedLocusNames=Os07g0604400, LOC_Os07g41320;
GN ORFNames=OsJ_25038 {ECO:0000312|EMBL:EAZ40581.1}, OSJNBb0040H10.13;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [4]
RP IDENTIFICATION, AND NOMENCLATURE.
RX PubMed=12953108; DOI=10.1105/tpc.011775;
RA Li Y., Qian Q., Zhou Y., Yan M., Sun L., Zhang M., Fu Z., Wang Y., Han B.,
RA Pang X., Chen M., Li J.;
RT "BRITTLE CULM1, which encodes a COBRA-like protein, affects the mechanical
RT properties of rice plants.";
RL Plant Cell 15:2020-2031(2003).
CC -!- FUNCTION: Involved in determining the orientation of cell expansion,
CC probably by playing an important role in cellulose deposition. May act
CC by recruiting cellulose synthesizing complexes to discrete positions on
CC the cell surface (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Lipid-anchor, GPI-
CC anchor {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the COBRA family. {ECO:0000305}.
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DR EMBL; AP005175; BAC83873.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT02550.1; -; Genomic_DNA.
DR EMBL; CM000144; EAZ40581.1; -; Genomic_DNA.
DR RefSeq; XP_015646929.1; XM_015791443.1.
DR AlphaFoldDB; Q6Z4G7; -.
DR STRING; 4530.OS07T0604400-00; -.
DR PaxDb; Q6Z4G7; -.
DR PRIDE; Q6Z4G7; -.
DR EnsemblPlants; Os07t0604400-00; Os07t0604400-00; Os07g0604400.
DR GeneID; 4343845; -.
DR Gramene; Os07t0604400-00; Os07t0604400-00; Os07g0604400.
DR KEGG; osa:4343845; -.
DR eggNOG; ENOG502QQYT; Eukaryota.
DR HOGENOM; CLU_038120_0_0_1; -.
DR InParanoid; Q6Z4G7; -.
DR OMA; CACGCDA; -.
DR OrthoDB; 623715at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000007752; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR Genevisible; Q6Z4G7; OS.
DR GO; GO:0046658; C:anchored component of plasma membrane; IBA:GO_Central.
DR GO; GO:0010215; P:cellulose microfibril organization; IEA:InterPro.
DR GO; GO:0052324; P:plant-type cell wall cellulose biosynthetic process; IBA:GO_Central.
DR InterPro; IPR006918; COBRA_pln.
DR PANTHER; PTHR31673; PTHR31673; 1.
DR Pfam; PF04833; COBRA; 1.
DR PIRSF; PIRSF038122; COBRA; 1.
PE 3: Inferred from homology;
KW Cell membrane; Glycoprotein; GPI-anchor; Lipoprotein; Membrane;
KW Reference proteome; Signal.
FT SIGNAL 1..21
FT /evidence="ECO:0000255"
FT CHAIN 22..426
FT /note="COBRA-like protein 6"
FT /id="PRO_0000247637"
FT PROPEP 427..451
FT /note="Removed in mature form"
FT /evidence="ECO:0000255"
FT /id="PRO_0000247638"
FT LIPID 426
FT /note="GPI-anchor amidated asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 30
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 155
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 163
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 202
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 227
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 323
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 338
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 357
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
SQ SEQUENCE 451 AA; 49623 MW; F5CC138A9CEC8C03 CRC64;
MAVLGSLLLL ILAATLSVAV AYDPLDPNGN ITIKWDVMSW TPDGYVAMVT INNYQTYRQI
MAPGWTVGWT WARQEVIWSM VGAQATDQGD CSRFKANLPH CCRRTPAVVD LLPGVPYNQQ
IANCCRGGVL PAYGQAPSAA AAAFQVSVGQ AGTTNRTVRL PRNFTLLGPG PGYTCGRARV
VPSTVFLTAD RRRKTQALMT WNVTCTYSQH LASKYPSCCV SFSSFYNDTI VPCAKCACGC
DAHKPCVRSE RDGKRLAVTG KKHDANANAH GRGNGVAAAA MAAPLLQCTT HMCPVRVHWH
VKLNYREYWR AKITIVNFNY RMNYTGWTLV AQHPNLDNIT EVFSFDYKPV VSYGSINDTA
MFYGLKYFND QLMEAGPHGN VQSEVLMRKD ARTFTFRQGW AFPRKVYFNG DECQMPPPDS
YPYLPNAAPP AAASLVGSAV AMAALVFFLM A