COBQ_CORDI
ID COBQ_CORDI Reviewed; 479 AA.
AC Q6NGL6;
DT 15-MAR-2005, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 99.
DE RecName: Full=Cobyric acid synthase {ECO:0000255|HAMAP-Rule:MF_00028};
GN Name=cobQ {ECO:0000255|HAMAP-Rule:MF_00028}; OrderedLocusNames=DIP1495;
OS Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype
OS gravis).
OC Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae;
OC Corynebacterium.
OX NCBI_TaxID=257309;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700971 / NCTC 13129 / Biotype gravis;
RX PubMed=14602910; DOI=10.1093/nar/gkg874;
RA Cerdeno-Tarraga A.-M., Efstratiou A., Dover L.G., Holden M.T.G.,
RA Pallen M.J., Bentley S.D., Besra G.S., Churcher C.M., James K.D.,
RA De Zoysa A., Chillingworth T., Cronin A., Dowd L., Feltwell T., Hamlin N.,
RA Holroyd S., Jagels K., Moule S., Quail M.A., Rabbinowitsch E.,
RA Rutherford K.M., Thomson N.R., Unwin L., Whitehead S., Barrell B.G.,
RA Parkhill J.;
RT "The complete genome sequence and analysis of Corynebacterium diphtheriae
RT NCTC13129.";
RL Nucleic Acids Res. 31:6516-6523(2003).
CC -!- FUNCTION: Catalyzes amidations at positions B, D, E, and G on
CC adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine,
CC and one molecule of ATP is hydrogenolyzed for each amidation.
CC {ECO:0000255|HAMAP-Rule:MF_00028}.
CC -!- PATHWAY: Cofactor biosynthesis; adenosylcobalamin biosynthesis.
CC {ECO:0000255|HAMAP-Rule:MF_00028}.
CC -!- SIMILARITY: Belongs to the CobB/CobQ family. CobQ subfamily.
CC {ECO:0000255|HAMAP-Rule:MF_00028}.
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DR EMBL; BX248358; CAE50022.1; -; Genomic_DNA.
DR RefSeq; WP_010935105.1; NC_002935.2.
DR AlphaFoldDB; Q6NGL6; -.
DR SMR; Q6NGL6; -.
DR STRING; 257309.DIP1495; -.
DR EnsemblBacteria; CAE50022; CAE50022; DIP1495.
DR KEGG; cdi:DIP1495; -.
DR HOGENOM; CLU_019250_2_2_11; -.
DR OMA; EIHHGVA; -.
DR OrthoDB; 744477at2; -.
DR UniPathway; UPA00148; -.
DR Proteomes; UP000002198; Chromosome.
DR GO; GO:0015420; F:ABC-type vitamin B12 transporter activity; IEA:UniProtKB-UniRule.
DR GO; GO:0003824; F:catalytic activity; IEA:InterPro.
DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:UniProtKB-UniPathway.
DR GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-KW.
DR CDD; cd01750; GATase1_CobQ; 1.
DR Gene3D; 3.40.50.300; -; 1.
DR Gene3D; 3.40.50.880; -; 1.
DR HAMAP; MF_00028; CobQ; 1.
DR InterPro; IPR029062; Class_I_gatase-like.
DR InterPro; IPR002586; CobQ/CobB/MinD/ParA_Nub-bd_dom.
DR InterPro; IPR033949; CobQ_GATase1.
DR InterPro; IPR004459; CobQ_synth.
DR InterPro; IPR011698; GATase_3.
DR InterPro; IPR027417; P-loop_NTPase.
DR PANTHER; PTHR21343:SF1; PTHR21343:SF1; 1.
DR Pfam; PF01656; CbiA; 1.
DR Pfam; PF07685; GATase_3; 1.
DR SUPFAM; SSF52317; SSF52317; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR TIGRFAMs; TIGR00313; cobQ; 1.
DR PROSITE; PS51274; GATASE_COBBQ; 1.
PE 3: Inferred from homology;
KW Cobalamin biosynthesis; Glutamine amidotransferase; Reference proteome.
FT CHAIN 1..479
FT /note="Cobyric acid synthase"
FT /id="PRO_0000141299"
FT DOMAIN 256..425
FT /note="GATase cobBQ-type"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00028"
FT ACT_SITE 337
FT /note="Nucleophile"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00028"
FT ACT_SITE 417
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00028"
SQ SEQUENCE 479 AA; 51479 MW; 30557A2FB9B0B9D2 CRC64;
MKSFLVAGCT SDAGKSVVVA GLCRALTRRG LRVAPFKAQN MSNNSAVTPD GGEIGRAQAL
QAYACGLTPS VDFNPILLKP GSDRTSQLVV RGIATGNVSA RSYIEHRTEL RKIASESLNS
LRERFDVVVC EGAGSPAETN LRATDVANFG LAEECDLPVY IVGDIDRGGV LAHFYGTHQI
VDDADRARIK GFVVNKFRGD VSILEPGLQD LEDRLGVPTV AVLPFIHGLW IDAEDSLQST
IGATVGPAAA PLGTQRLRVA AIRLPRVSNA TDVEALACEP GVTVTWTVDP DSVAEADLVV
IPGSKATLSD LAWLRSTGVA DAIMERARSQ RPILGICGGF QMMCSHIDDP VESGSTTPVE
GLGIFDVDIE FHPEKTLIRH ENGGYEVHHG RVERSTEQPW IGNEGARTQS NFGTHRHGYL
EDDEARRDFL GTVSTLAQRP GFVVAPATSF EAERNKQLDV IADAIEQHWD LDQLIAALT