COBQ_GRABC
ID COBQ_GRABC Reviewed; 481 AA.
AC Q0BUF0;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 17-OCT-2006, sequence version 1.
DT 25-MAY-2022, entry version 101.
DE RecName: Full=Cobyric acid synthase {ECO:0000255|HAMAP-Rule:MF_00028};
GN Name=cobQ {ECO:0000255|HAMAP-Rule:MF_00028};
GN OrderedLocusNames=GbCGDNIH1_0654;
OS Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).
OC Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales;
OC Acetobacteraceae; Granulibacter.
OX NCBI_TaxID=391165;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC BAA-1260 / CGDNIH1;
RX PubMed=17827295; DOI=10.1128/jb.00793-07;
RA Greenberg D.E., Porcella S.F., Zelazny A.M., Virtaneva K., Sturdevant D.E.,
RA Kupko J.J. III, Barbian K.D., Babar A., Dorward D.W., Holland S.M.;
RT "Genome sequence analysis of the emerging human pathogenic acetic acid
RT bacterium Granulibacter bethesdensis.";
RL J. Bacteriol. 189:8727-8736(2007).
CC -!- FUNCTION: Catalyzes amidations at positions B, D, E, and G on
CC adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine,
CC and one molecule of ATP is hydrogenolyzed for each amidation.
CC {ECO:0000255|HAMAP-Rule:MF_00028}.
CC -!- PATHWAY: Cofactor biosynthesis; adenosylcobalamin biosynthesis.
CC {ECO:0000255|HAMAP-Rule:MF_00028}.
CC -!- SIMILARITY: Belongs to the CobB/CobQ family. CobQ subfamily.
CC {ECO:0000255|HAMAP-Rule:MF_00028}.
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DR EMBL; CP000394; ABI61552.1; -; Genomic_DNA.
DR RefSeq; WP_011631361.1; NC_008343.2.
DR AlphaFoldDB; Q0BUF0; -.
DR SMR; Q0BUF0; -.
DR STRING; 391165.GbCGDNIH1_0654; -.
DR EnsemblBacteria; ABI61552; ABI61552; GbCGDNIH1_0654.
DR KEGG; gbe:GbCGDNIH1_0654; -.
DR eggNOG; COG1492; Bacteria.
DR HOGENOM; CLU_019250_2_2_5; -.
DR OMA; EIHHGVA; -.
DR UniPathway; UPA00148; -.
DR Proteomes; UP000001963; Chromosome.
DR GO; GO:0015420; F:ABC-type vitamin B12 transporter activity; IEA:UniProtKB-UniRule.
DR GO; GO:0003824; F:catalytic activity; IEA:InterPro.
DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:UniProtKB-UniPathway.
DR GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-KW.
DR CDD; cd01750; GATase1_CobQ; 1.
DR Gene3D; 3.40.50.300; -; 1.
DR Gene3D; 3.40.50.880; -; 1.
DR HAMAP; MF_00028; CobQ; 1.
DR InterPro; IPR029062; Class_I_gatase-like.
DR InterPro; IPR002586; CobQ/CobB/MinD/ParA_Nub-bd_dom.
DR InterPro; IPR033949; CobQ_GATase1.
DR InterPro; IPR004459; CobQ_synth.
DR InterPro; IPR011698; GATase_3.
DR InterPro; IPR027417; P-loop_NTPase.
DR PANTHER; PTHR21343:SF1; PTHR21343:SF1; 1.
DR Pfam; PF01656; CbiA; 1.
DR Pfam; PF07685; GATase_3; 1.
DR SUPFAM; SSF52317; SSF52317; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR TIGRFAMs; TIGR00313; cobQ; 1.
DR PROSITE; PS51274; GATASE_COBBQ; 1.
PE 3: Inferred from homology;
KW Cobalamin biosynthesis; Glutamine amidotransferase; Reference proteome.
FT CHAIN 1..481
FT /note="Cobyric acid synthase"
FT /id="PRO_0000332339"
FT DOMAIN 248..435
FT /note="GATase cobBQ-type"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00028"
FT ACT_SITE 329
FT /note="Nucleophile"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00028"
FT ACT_SITE 427
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00028"
SQ SEQUENCE 481 AA; 50364 MW; A3D5038AFFADCD4C CRC64;
MIQGTGSSVG KSLLVAGVSR ALTRRGLVVR PFKPQNMSNN AAIAADGGEI GRAQALQARA
CRISPSHHMN PVLLKPQSEI GAQIVVQGKV HGQATARAYQ AMKPQLLGTV LESFGILRKQ
ADIVLVEGAG SASEINLRAG DIANMGFARA ANVPVVIAGD IDRGGVIAAL VGTKTVLDPD
DAAMVRGFLV NRMRGDPSLF AEGMRLIEQQ TGWEALGLVP HCEAARALPA EDAADLLRGL
SAPTRSGNTV IAVPMLPHIA NFDDLDPLAA EDSVTLVMVP PGQPLPVADA IIIPGSKTVI
ADLAALRHHG WDIDILAHRR RGRSIIGLCG GYQMLGRAIH DPQGFEGPAG SAAGLGLLEI
ETVLEPHKIL TSRSGHLFNH DVPVSGYEMH MGITTGSGLR RPLLSLGPDA PEGCVSADGV
VMGTYLHGLF HGGAFRRHLL ATLDVSSHGG DHEDAVEHAL DALADHMEAH VAIDRLLALS
A