COBQ_PROMM
ID COBQ_PROMM Reviewed; 501 AA.
AC Q7V6H6;
DT 15-MAR-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2003, sequence version 1.
DT 25-MAY-2022, entry version 101.
DE RecName: Full=Cobyric acid synthase {ECO:0000255|HAMAP-Rule:MF_00028};
GN Name=cobQ {ECO:0000255|HAMAP-Rule:MF_00028}; OrderedLocusNames=PMT_1183;
OS Prochlorococcus marinus (strain MIT 9313).
OC Bacteria; Cyanobacteria; Synechococcales; Prochlorococcaceae;
OC Prochlorococcus.
OX NCBI_TaxID=74547;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MIT 9313;
RX PubMed=12917642; DOI=10.1038/nature01947;
RA Rocap G., Larimer F.W., Lamerdin J.E., Malfatti S., Chain P., Ahlgren N.A.,
RA Arellano A., Coleman M., Hauser L., Hess W.R., Johnson Z.I., Land M.L.,
RA Lindell D., Post A.F., Regala W., Shah M., Shaw S.L., Steglich C.,
RA Sullivan M.B., Ting C.S., Tolonen A., Webb E.A., Zinser E.R.,
RA Chisholm S.W.;
RT "Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche
RT differentiation.";
RL Nature 424:1042-1047(2003).
CC -!- FUNCTION: Catalyzes amidations at positions B, D, E, and G on
CC adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine,
CC and one molecule of ATP is hydrogenolyzed for each amidation.
CC {ECO:0000255|HAMAP-Rule:MF_00028}.
CC -!- PATHWAY: Cofactor biosynthesis; adenosylcobalamin biosynthesis.
CC {ECO:0000255|HAMAP-Rule:MF_00028}.
CC -!- SIMILARITY: Belongs to the CobB/CobQ family. CobQ subfamily.
CC {ECO:0000255|HAMAP-Rule:MF_00028}.
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DR EMBL; BX548175; CAE21358.1; -; Genomic_DNA.
DR AlphaFoldDB; Q7V6H6; -.
DR STRING; 74547.PMT_1183; -.
DR EnsemblBacteria; CAE21358; CAE21358; PMT_1183.
DR KEGG; pmt:PMT_1183; -.
DR eggNOG; COG1492; Bacteria.
DR HOGENOM; CLU_019250_2_2_3; -.
DR OMA; EIHHGVA; -.
DR UniPathway; UPA00148; -.
DR Proteomes; UP000001423; Chromosome.
DR GO; GO:0015420; F:ABC-type vitamin B12 transporter activity; IEA:UniProtKB-UniRule.
DR GO; GO:0003824; F:catalytic activity; IEA:InterPro.
DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:UniProtKB-UniPathway.
DR GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-KW.
DR CDD; cd01750; GATase1_CobQ; 1.
DR Gene3D; 3.40.50.300; -; 1.
DR Gene3D; 3.40.50.880; -; 1.
DR HAMAP; MF_00028; CobQ; 1.
DR InterPro; IPR029062; Class_I_gatase-like.
DR InterPro; IPR002586; CobQ/CobB/MinD/ParA_Nub-bd_dom.
DR InterPro; IPR033949; CobQ_GATase1.
DR InterPro; IPR004459; CobQ_synth.
DR InterPro; IPR011698; GATase_3.
DR InterPro; IPR027417; P-loop_NTPase.
DR PANTHER; PTHR21343:SF1; PTHR21343:SF1; 1.
DR Pfam; PF01656; CbiA; 1.
DR Pfam; PF07685; GATase_3; 1.
DR SUPFAM; SSF52317; SSF52317; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR TIGRFAMs; TIGR00313; cobQ; 1.
DR PROSITE; PS51274; GATASE_COBBQ; 1.
PE 3: Inferred from homology;
KW Cobalamin biosynthesis; Glutamine amidotransferase; Reference proteome.
FT CHAIN 1..501
FT /note="Cobyric acid synthase"
FT /id="PRO_0000141318"
FT DOMAIN 253..450
FT /note="GATase cobBQ-type"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00028"
FT ACT_SITE 334
FT /note="Nucleophile"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00028"
FT ACT_SITE 442
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00028"
SQ SEQUENCE 501 AA; 55320 MW; 3AD2DF9761D05B5E CRC64;
MSTPLMVLGT SSGAGKSLMS AALCRLLLRQ GETPIPFKGQ NMSNNAWVDE SGGEMAYSQA
LQAWAAGLKP QCAMNPVLLK PQGDSTSEVI HLGQSVGTAR AETYYEQWFR PGWSVIREAL
KDLQCSYTHG RLVLEGAGSP VEVNLQRRDL TNLRLAQFLR ARCLLVADIE RGGVFAQIMG
TLSLLKPVEK QLIRGLLINR FRGRRELFDE GRDWLEAETG IPVIGVMPWL EELFPPEDSL
DLLERRGKKN DAEIEIAVLK LPSLSNFSDL DPLEAEPTVQ LRWVEPGTFL GMPDAVIIPG
SKQTLRDLNS LNRSGLGSQL QTYAQSGGHV FGICGGMQML GRTLADPLGL EGVTTTDPSS
SMAGLNLLPL DTVFKRNKAL SQCQRITQWP DNAKVKGFEL HHGNSQLIQG SHESVLPMAD
DPSMGWVSKN ESCGQVAGTY LHGIFENGRW RRLWLNLIRK QKGLADLPTD ISNHEQQREQ
LLNRLADVFE EHVNINPLLG T