COBQ_PROMP
ID COBQ_PROMP Reviewed; 509 AA.
AC Q7V0U2;
DT 15-MAR-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2003, sequence version 1.
DT 25-MAY-2022, entry version 100.
DE RecName: Full=Cobyric acid synthase {ECO:0000255|HAMAP-Rule:MF_00028};
GN Name=cobQ {ECO:0000255|HAMAP-Rule:MF_00028}; OrderedLocusNames=PMM1160;
OS Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / NIES-2087 /
OS MED4).
OC Bacteria; Cyanobacteria; Synechococcales; Prochlorococcaceae;
OC Prochlorococcus.
OX NCBI_TaxID=59919;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCMP1986 / NIES-2087 / MED4;
RX PubMed=12917642; DOI=10.1038/nature01947;
RA Rocap G., Larimer F.W., Lamerdin J.E., Malfatti S., Chain P., Ahlgren N.A.,
RA Arellano A., Coleman M., Hauser L., Hess W.R., Johnson Z.I., Land M.L.,
RA Lindell D., Post A.F., Regala W., Shah M., Shaw S.L., Steglich C.,
RA Sullivan M.B., Ting C.S., Tolonen A., Webb E.A., Zinser E.R.,
RA Chisholm S.W.;
RT "Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche
RT differentiation.";
RL Nature 424:1042-1047(2003).
CC -!- FUNCTION: Catalyzes amidations at positions B, D, E, and G on
CC adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine,
CC and one molecule of ATP is hydrogenolyzed for each amidation.
CC {ECO:0000255|HAMAP-Rule:MF_00028}.
CC -!- PATHWAY: Cofactor biosynthesis; adenosylcobalamin biosynthesis.
CC {ECO:0000255|HAMAP-Rule:MF_00028}.
CC -!- SIMILARITY: Belongs to the CobB/CobQ family. CobQ subfamily.
CC {ECO:0000255|HAMAP-Rule:MF_00028}.
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DR EMBL; BX548174; CAE19619.1; -; Genomic_DNA.
DR RefSeq; WP_011132794.1; NC_005072.1.
DR AlphaFoldDB; Q7V0U2; -.
DR SMR; Q7V0U2; -.
DR STRING; 59919.PMM1160; -.
DR EnsemblBacteria; CAE19619; CAE19619; PMM1160.
DR KEGG; pmm:PMM1160; -.
DR eggNOG; COG1492; Bacteria.
DR HOGENOM; CLU_019250_2_2_3; -.
DR OMA; EIHHGVA; -.
DR OrthoDB; 744477at2; -.
DR UniPathway; UPA00148; -.
DR Proteomes; UP000001026; Chromosome.
DR GO; GO:0015420; F:ABC-type vitamin B12 transporter activity; IEA:UniProtKB-UniRule.
DR GO; GO:0003824; F:catalytic activity; IEA:InterPro.
DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:UniProtKB-UniPathway.
DR GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-KW.
DR CDD; cd01750; GATase1_CobQ; 1.
DR Gene3D; 3.40.50.300; -; 1.
DR Gene3D; 3.40.50.880; -; 1.
DR HAMAP; MF_00028; CobQ; 1.
DR InterPro; IPR029062; Class_I_gatase-like.
DR InterPro; IPR002586; CobQ/CobB/MinD/ParA_Nub-bd_dom.
DR InterPro; IPR033949; CobQ_GATase1.
DR InterPro; IPR004459; CobQ_synth.
DR InterPro; IPR011698; GATase_3.
DR InterPro; IPR027417; P-loop_NTPase.
DR PANTHER; PTHR21343:SF1; PTHR21343:SF1; 1.
DR Pfam; PF01656; CbiA; 1.
DR Pfam; PF07685; GATase_3; 1.
DR SUPFAM; SSF52317; SSF52317; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR TIGRFAMs; TIGR00313; cobQ; 1.
DR PROSITE; PS51274; GATASE_COBBQ; 1.
PE 3: Inferred from homology;
KW Cobalamin biosynthesis; Glutamine amidotransferase.
FT CHAIN 1..509
FT /note="Cobyric acid synthase"
FT /id="PRO_0000141319"
FT DOMAIN 262..459
FT /note="GATase cobBQ-type"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00028"
FT ACT_SITE 343
FT /note="Nucleophile"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00028"
FT ACT_SITE 451
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00028"
SQ SEQUENCE 509 AA; 57570 MW; 10E49E5A8C3167AC CRC64;
MELIEKLQPI KKPLMVLGTS SGAGKSLTVT AIGRILKNSG EEPIPFKGQN MSNNAWVDWN
GGEMAFSQAL QAFACGIIPS SEMNPILLKP QGNSTSEVIH LGKSKGITTA KDYYKDWFFP
GWGVIKKSLN SIYERYPNCR LIIEGAGSPV EMNLIHRDLT NLRVAKYLNA NCILVTDIER
GGVFAQIIGT LELMKPDERK LIKGILINRF RGDLSLFEEG KKWIENKTKI PVLGIIPWLD
DKFPPEDSLD LLEKKSSLTN PELKVGIIKL PSISNFSDFD PLENEESILI KWVMESQNLN
QYDFLIIPGS KQTIKDQKFL RDSGLSEDIK NYSTNKGNIF GICGGLQMLG TILEDPFFKE
GSKINCEKSI NGIGLLPLKT TFFQKKITRQ INSESIWPQV TEINGFEIHN GVTELDNSQD
TFKIKPIFKD LDLGWYKENI QGGTIAGTYI HGIFENDDWR DHYLNLIRKG KNLPLLKKRT
RSYKMKRENI IDNLANEFKK NFNISSLLN