COI1A_ORYSJ
ID COI1A_ORYSJ Reviewed; 595 AA.
AC Q6Y9P5; A0A0P0VAF7; Q0JHN3;
DT 09-DEC-2015, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 120.
DE RecName: Full=Coronatine-insensitive protein homolog 1a {ECO:0000305};
DE Short=OsCOI1a {ECO:0000303|PubMed:23320078};
GN Name=COI1A {ECO:0000303|PubMed:23320078};
GN Synonyms=COI1 {ECO:0000303|PubMed:21332845};
GN OrderedLocusNames=Os01g0853400 {ECO:0000312|EMBL:BAF06745.2},
GN LOC_Os01g63420 {ECO:0000305};
GN ORFNames=OsJ_04105 {ECO:0000312|EMBL:EAZ14179.1},
GN P0529E05.20 {ECO:0000312|EMBL:BAD81943.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000312|EMBL:AAO38719.1};
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Wang W., Wang X.;
RT "Oryza sativa japonica group COI1 mRNA.";
RL Submitted (OCT-2002) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Dai L., Wang Z., Zhou Q., Xie D., Wang G.;
RT "Oryza sativa japonica group coronatine-insensitive 1 mRNA.";
RL Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [8]
RP FUNCTION, AND INTERACTION WITH TIFY6A/JAZ3; TIFY6B/JAZ4 AND TIFY11D/JAZ12.
RX PubMed=21332845; DOI=10.1111/j.1365-313x.2010.04477.x;
RA Seo J.S., Joo J., Kim M.J., Kim Y.K., Nahm B.H., Song S.I., Cheong J.J.,
RA Lee J.S., Kim J.K., Choi Y.D.;
RT "OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins
RT in a jasmonate signaling pathway leading to drought tolerance in rice.";
RL Plant J. 65:907-921(2011).
RN [9]
RP FUNCTION, AND INDUCTION.
RX PubMed=22558386; DOI=10.1371/journal.pone.0036214;
RA Ye M., Luo S.M., Xie J.F., Li Y.F., Xu T., Liu Y., Song Y.Y.,
RA Zhu-Salzman K., Zeng R.S.;
RT "silencing COI1 in rice increases susceptibility to chewing insects and
RT impairs inducible defense.";
RL PLoS ONE 7:E36214-E36214(2012).
RN [10]
RP FUNCTION.
RX PubMed=22529386; DOI=10.1073/pnas.1201616109;
RA Yang D.L., Yao J., Mei C.S., Tong X.H., Zeng L.J., Li Q., Xiao L.T.,
RA Sun T.P., Li J., Deng X.W., Lee C.M., Thomashow M.F., Yang Y., He Z.,
RA He S.Y.;
RT "Plant hormone jasmonate prioritizes defense over growth by interfering
RT with gibberellin signaling cascade.";
RL Proc. Natl. Acad. Sci. U.S.A. 109:E1192-E1200(2012).
RN [11]
RP FUNCTION, INTERACTION WITH TIFY6A/JAZ3; TIFY6B/JAZ4; TIFY9/JAZ5;
RP TIFY10A/JAZ6; TIFY10B/JAZ7; TIFY11A/JAZ9; TIFY11C/JAZ11 AND TIFY11D/JAZ12,
RP AND TISSUE SPECIFICITY.
RX PubMed=23320078; DOI=10.1371/journal.pone.0052802;
RA Lee H.Y., Seo J.S., Cho J.H., Jung H., Kim J.K., Lee J.S., Rhee S.,
RA Do Choi Y.;
RT "Oryza sativa COI homologues restore jasmonate signal transduction in
RT Arabidopsis coi1-1 mutants.";
RL PLoS ONE 8:E52802-E52802(2013).
RN [12]
RP FUNCTION.
RX PubMed=24003150; DOI=10.1073/pnas.1305848110;
RA Ye M., Song Y., Long J., Wang R., Baerson S.R., Pan Z., Zhu-Salzman K.,
RA Xie J., Cai K., Luo S., Zeng R.;
RT "Priming of jasmonate-mediated antiherbivore defense responses in rice by
RT silicon.";
RL Proc. Natl. Acad. Sci. U.S.A. 110:E3631-E3639(2013).
RN [13]
RP INTERACTION WITH TIFY11A/JAZ9.
RX PubMed=25617318; DOI=10.1016/j.plantsci.2014.12.010;
RA Wu H., Ye H., Yao R., Zhang T., Xiong L.;
RT "OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and
RT modulates salt stress tolerance in rice.";
RL Plant Sci. 232:1-12(2015).
CC -!- FUNCTION: Involved in jasmonate (JA) signaling. Required for jasmonate
CC signaling in plant defense responses (PubMed:22529386). Can complement
CC Arabidopsis coi1-1 mutant and restore jasmonate signaling
CC (PubMed:23320078). Required for JA-regulated defense responses to
CC infestation by the leaffolder Cnaphalocrocis medinalis
CC (PubMed:22558386, PubMed:24003150). May act on an initial response of
CC jasmonate-regulated gene expression toward drought tolerance as part of
CC a BHLH148-TIFY11D/JAZ12-COI1A complex (PubMed:21332845). Component of
CC SCF(COI1) E3 ubiquitin ligase complexes, which may mediate the
CC ubiquitination and subsequent proteasomal degradation of target
CC proteins, including TIFY/JAZ family (By similarity).
CC {ECO:0000250|UniProtKB:O04197, ECO:0000269|PubMed:21332845,
CC ECO:0000269|PubMed:22529386, ECO:0000269|PubMed:22558386,
CC ECO:0000269|PubMed:23320078, ECO:0000269|PubMed:24003150}.
CC -!- SUBUNIT: Interacts with TIFY6A/JAZ3, TIFY6B/JAZ4 and TIFY11D/JAZ12 in a
CC coronatine-dependent manner (PubMed:21332845, PubMed:23320078).
CC Interacts with TIFY9/JAZ5, TIFY10A/JAZ6, TIFY10B/JAZ7 and TIFY11C/JAZ11
CC in a coronatine-dependent manner (PubMed:23320078). Interacts with
CC TIFY11A/JAZ9 in a coronatine-dependent manner (PubMed:23320078,
CC PubMed:25617318). {ECO:0000269|PubMed:21332845,
CC ECO:0000269|PubMed:23320078, ECO:0000269|PubMed:25617318}.
CC -!- TISSUE SPECIFICITY: Expressed in roots, shoots, leaf sheaths and leaf
CC blades. {ECO:0000269|PubMed:23320078}.
CC -!- INDUCTION: By the leaffolder Cnaphalocrocis medinalis infestation and
CC methyl jasmonate (MeJA) treatment. {ECO:0000269|PubMed:22558386}.
CC -!- MISCELLANEOUS: Plants silencing COI1A and COI1B show increased plant
CC height and seed length, are hypersensitive to gibberellin, and display
CC reduced sensitivity to inhibition of seedling growth by jasmonate
CC (PubMed:22529386). Plants silencing COI1A show early and reduced
CC tillering with few grain filling, and display increased sensitivity to
CC the chewing insect Cnaphalocrocis medinalis (PubMed:22558386).
CC {ECO:0000269|PubMed:22529386, ECO:0000269|PubMed:22558386}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF06745.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AY168645; AAO38719.1; -; mRNA.
DR EMBL; DQ028826; AAY41186.1; -; mRNA.
DR EMBL; AP003279; BAD81943.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF06745.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014957; BAS75269.1; -; Genomic_DNA.
DR EMBL; CM000138; EAZ14179.1; -; Genomic_DNA.
DR RefSeq; XP_015621119.1; XM_015765633.1.
DR AlphaFoldDB; Q6Y9P5; -.
DR SMR; Q6Y9P5; -.
DR STRING; 4530.OS01T0853400-01; -.
DR PaxDb; Q6Y9P5; -.
DR PRIDE; Q6Y9P5; -.
DR EnsemblPlants; Os01t0853400-01; Os01t0853400-01; Os01g0853400.
DR GeneID; 4324818; -.
DR Gramene; Os01t0853400-01; Os01t0853400-01; Os01g0853400.
DR KEGG; osa:4324818; -.
DR eggNOG; KOG1947; Eukaryota.
DR HOGENOM; CLU_022456_2_0_1; -.
DR InParanoid; Q6Y9P5; -.
DR OMA; CYTATPD; -.
DR OrthoDB; 444688at2759; -.
DR PlantReactome; R-OSA-6787011; Jasmonic acid signaling.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000007752; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR GO; GO:0019005; C:SCF ubiquitin ligase complex; IBA:GO_Central.
DR GO; GO:0002213; P:defense response to insect; IMP:UniProtKB.
DR GO; GO:2000022; P:regulation of jasmonic acid mediated signaling pathway; IMP:UniProtKB.
DR GO; GO:0031146; P:SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; IBA:GO_Central.
DR Gene3D; 3.80.10.10; -; 1.
DR InterPro; IPR041567; COI1_F-box.
DR InterPro; IPR036047; F-box-like_dom_sf.
DR InterPro; IPR001611; Leu-rich_rpt.
DR InterPro; IPR006553; Leu-rich_rpt_Cys-con_subtyp.
DR InterPro; IPR032675; LRR_dom_sf.
DR InterPro; IPR041101; Transp_inhibit.
DR Pfam; PF18511; F-box_5; 1.
DR Pfam; PF13516; LRR_6; 1.
DR Pfam; PF18791; Transp_inhibit; 1.
DR SMART; SM00367; LRR_CC; 4.
DR SUPFAM; SSF81383; SSF81383; 1.
PE 1: Evidence at protein level;
KW Jasmonic acid signaling pathway; Plant defense; Reference proteome;
KW Stress response; Ubl conjugation pathway.
FT CHAIN 1..595
FT /note="Coronatine-insensitive protein homolog 1a"
FT /id="PRO_0000434866"
FT DOMAIN 20..62
FT /note="F-box"
FT /evidence="ECO:0000255"
FT BINDING 90
FT /ligand="jasmonate"
FT /ligand_id="ChEBI:CHEBI:58431"
FT /evidence="ECO:0000250|UniProtKB:O04197"
FT BINDING 351
FT /ligand="jasmonate"
FT /ligand_id="ChEBI:CHEBI:58431"
FT /evidence="ECO:0000250|UniProtKB:O04197"
FT BINDING 389
FT /ligand="jasmonate"
FT /ligand_id="ChEBI:CHEBI:58431"
FT /evidence="ECO:0000250|UniProtKB:O04197"
FT BINDING 412
FT /ligand="jasmonate"
FT /ligand_id="ChEBI:CHEBI:58431"
FT /evidence="ECO:0000250|UniProtKB:O04197"
FT BINDING 499
FT /ligand="jasmonate"
FT /ligand_id="ChEBI:CHEBI:58431"
FT /evidence="ECO:0000250|UniProtKB:O04197"
SQ SEQUENCE 595 AA; 67009 MW; 463D938117567DCF CRC64;
MGGEVPEPRR LNRALSFDDW VPDEALHLVM GHVEDPRDRE AASRVCRRWH RIDALTRKHV
TVAFCYAARP ARLRERFPRL ESLSLKGKPR AAMYGLIPDD WGAYAAPWID ELAAPLECLK
ALHLRRMTVT DADIAALVRA RGHMLQELKL DKCIGFSTDA LRLVARSCRS LRTLFLEECH
ITDKGGEWLH ELAVNNSVLV TLNFYMTELK VAPADLELLA KNCKSLISLK MSECDLSDLI
SFFQTANALQ DFAGGAFYEV GELTKYEKVK FPPRLCFLGL TYMGTNEMPV IFPFSMKLKK
LDLQYTFLTT EDHCQIIAKC PNLLILEVRN VIGDRGLEVV GDTCKKLRRL RIERGDDDPG
LQEEQGGVSQ LGLTAVAVGC RELEYIAAYV SDITNGALES IGTFCKNLYD FRLVLLDRER
QVTDLPLDNG VCALLRNCTK LRRFALYLRP GGLSDDGLSY IGQYSGNIQY MLLGNVGESD
HGLIRFAVGC TNLQKLELRS CCFSERALSL AVLQMPSLRY IWVQGYRASQ TGLDLLLMAR
PFWNIEFTPP SPESFNHMTE DGEPCVDSHA QVLAYYSLAG RRSDCPQWVI PLHPA
