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COI1B_ORYSJ
ID   COI1B_ORYSJ             Reviewed;         597 AA.
AC   Q60EH4; A0A0P0WN59;
DT   09-DEC-2015, integrated into UniProtKB/Swiss-Prot.
DT   23-NOV-2004, sequence version 1.
DT   03-AUG-2022, entry version 126.
DE   RecName: Full=Coronatine-insensitive protein homolog 1b {ECO:0000305};
DE            Short=OsCOI1b {ECO:0000303|PubMed:23320078};
DE   AltName: Full=COI1 protein homolog {ECO:0000303|PubMed:23104764};
DE            Short=OsCOI1H {ECO:0000303|PubMed:23104764};
GN   Name=COI1B {ECO:0000303|PubMed:23320078};
GN   OrderedLocusNames=Os05g0449500 {ECO:0000312|EMBL:BAF17614.1};
GN   ORFNames=B1122D01.5 {ECO:0000312|EMBL:AAU90110.1},
GN   OsJ_18742 {ECO:0000312|EMBL:EEE63917.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA   Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA   Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA   Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT   "A fine physical map of the rice chromosome 5.";
RL   Mol. Genet. Genomics 274:337-345(2005).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [7]
RP   FUNCTION, AND INTERACTION WITH TIFY10C/JAZ8.
RX   PubMed=23104764; DOI=10.1093/pcp/pcs145;
RA   Yamada S., Kano A., Tamaoki D., Miyamoto A., Shishido H., Miyoshi S.,
RA   Taniguchi S., Akimitsu K., Gomi K.;
RT   "Involvement of OsJAZ8 in jasmonate-induced resistance to bacterial blight
RT   in rice.";
RL   Plant Cell Physiol. 53:2060-2072(2012).
RN   [8]
RP   FUNCTION.
RX   PubMed=22529386; DOI=10.1073/pnas.1201616109;
RA   Yang D.L., Yao J., Mei C.S., Tong X.H., Zeng L.J., Li Q., Xiao L.T.,
RA   Sun T.P., Li J., Deng X.W., Lee C.M., Thomashow M.F., Yang Y., He Z.,
RA   He S.Y.;
RT   "Plant hormone jasmonate prioritizes defense over growth by interfering
RT   with gibberellin signaling cascade.";
RL   Proc. Natl. Acad. Sci. U.S.A. 109:E1192-E1200(2012).
RN   [9]
RP   FUNCTION, INTERACTION WITH TIFY3/JAZ1; TIFY6A/JAZ3; TIFY6B/JAZ4;
RP   TIFY10A/JAZ6; TIFY10B/JAZ7; TIFY10C/JAZ8; TIFY11A/JAZ9; TIFY11B/JAZ10;
RP   TIFY11C/JAZ11 AND TIFY11D/JAZ12, AND TISSUE SPECIFICITY.
RX   PubMed=23320078; DOI=10.1371/journal.pone.0052802;
RA   Lee H.Y., Seo J.S., Cho J.H., Jung H., Kim J.K., Lee J.S., Rhee S.,
RA   Do Choi Y.;
RT   "Oryza sativa COI homologues restore jasmonate signal transduction in
RT   Arabidopsis coi1-1 mutants.";
RL   PLoS ONE 8:E52802-E52802(2013).
CC   -!- FUNCTION: Involved in jasmonate (JA) signaling. Required for jasmonate
CC       signaling in plant defense responses (PubMed:22529386). Can complement
CC       Arabidopsis coi1-1 mutant and restore jasmonate signaling
CC       (PubMed:23320078). Component of SCF(COI1) E3 ubiquitin ligase
CC       complexes, which may mediate the ubiquitination and subsequent
CC       proteasomal degradation of target proteins, including TIFY/JAZ family
CC       (By similarity). {ECO:0000250|UniProtKB:O04197,
CC       ECO:0000269|PubMed:22529386, ECO:0000269|PubMed:23320078}.
CC   -!- SUBUNIT: Interacts with TIFY10C/JAZ8 in a coronatine-dependent manner
CC       (PubMed:23104764, PubMed:23320078). Interacts with TIFY3/JAZ1,
CC       TIFY6A/JAZ3, TIFY6B/JAZ4, TIFY10A/JAZ6, TIFY10B/JAZ7, TIFY11A/JAZ9,
CC       TIFY11B/JAZ10, TIFY11C/JAZ11 and TIFY11D/JAZ12 in a coronatine-
CC       dependent manner (PubMed:23320078). {ECO:0000269|PubMed:23104764,
CC       ECO:0000269|PubMed:23320078}.
CC   -!- TISSUE SPECIFICITY: Expressed in roots, shoots, leaf sheaths and leaf
CC       blades. {ECO:0000269|PubMed:23320078}.
CC   -!- MISCELLANEOUS: Plants silencing COI1A and COI1B show increased plant
CC       height and seed length, are hypersensitive to gibberellin, and display
CC       reduced sensitivity to inhibition of seedling growth by jasmonate.
CC       {ECO:0000269|PubMed:22529386}.
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DR   EMBL; AC130602; AAU90110.1; -; Genomic_DNA.
DR   EMBL; AP008211; BAF17614.1; -; Genomic_DNA.
DR   EMBL; AP014961; BAS94315.1; -; Genomic_DNA.
DR   EMBL; CM000142; EEE63917.1; -; Genomic_DNA.
DR   EMBL; AK101514; -; NOT_ANNOTATED_CDS; mRNA.
DR   RefSeq; XP_015639870.1; XM_015784384.1.
DR   AlphaFoldDB; Q60EH4; -.
DR   SMR; Q60EH4; -.
DR   STRING; 4530.OS05T0449500-01; -.
DR   PaxDb; Q60EH4; -.
DR   PRIDE; Q60EH4; -.
DR   EnsemblPlants; Os05t0449500-01; Os05t0449500-01; Os05g0449500.
DR   GeneID; 4338955; -.
DR   Gramene; Os05t0449500-01; Os05t0449500-01; Os05g0449500.
DR   KEGG; osa:4338955; -.
DR   eggNOG; KOG1947; Eukaryota.
DR   HOGENOM; CLU_022456_1_0_1; -.
DR   InParanoid; Q60EH4; -.
DR   OMA; GWVPEEM; -.
DR   OrthoDB; 444688at2759; -.
DR   PlantReactome; R-OSA-6787011; Jasmonic acid signaling.
DR   Proteomes; UP000000763; Chromosome 5.
DR   Proteomes; UP000007752; Chromosome 5.
DR   Proteomes; UP000059680; Chromosome 5.
DR   GO; GO:0019005; C:SCF ubiquitin ligase complex; IBA:GO_Central.
DR   GO; GO:0006952; P:defense response; IEA:UniProtKB-KW.
DR   GO; GO:2000022; P:regulation of jasmonic acid mediated signaling pathway; IMP:UniProtKB.
DR   GO; GO:0031146; P:SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; IBA:GO_Central.
DR   Gene3D; 3.80.10.10; -; 1.
DR   InterPro; IPR041567; COI1_F-box.
DR   InterPro; IPR036047; F-box-like_dom_sf.
DR   InterPro; IPR006553; Leu-rich_rpt_Cys-con_subtyp.
DR   InterPro; IPR032675; LRR_dom_sf.
DR   InterPro; IPR041101; Transp_inhibit.
DR   Pfam; PF18511; F-box_5; 1.
DR   Pfam; PF18791; Transp_inhibit; 1.
DR   SMART; SM00367; LRR_CC; 5.
DR   SUPFAM; SSF81383; SSF81383; 1.
PE   1: Evidence at protein level;
KW   Jasmonic acid signaling pathway; Plant defense; Reference proteome;
KW   Ubl conjugation pathway.
FT   CHAIN           1..597
FT                   /note="Coronatine-insensitive protein homolog 1b"
FT                   /id="PRO_0000434868"
FT   DOMAIN          22..64
FT                   /note="F-box"
FT                   /evidence="ECO:0000255"
FT   BINDING         92
FT                   /ligand="jasmonate"
FT                   /ligand_id="ChEBI:CHEBI:58431"
FT                   /evidence="ECO:0000250|UniProtKB:O04197"
FT   BINDING         353
FT                   /ligand="jasmonate"
FT                   /ligand_id="ChEBI:CHEBI:58431"
FT                   /evidence="ECO:0000250|UniProtKB:O04197"
FT   BINDING         391
FT                   /ligand="jasmonate"
FT                   /ligand_id="ChEBI:CHEBI:58431"
FT                   /evidence="ECO:0000250|UniProtKB:O04197"
FT   BINDING         414
FT                   /ligand="jasmonate"
FT                   /ligand_id="ChEBI:CHEBI:58431"
FT                   /evidence="ECO:0000250|UniProtKB:O04197"
FT   BINDING         501
FT                   /ligand="jasmonate"
FT                   /ligand_id="ChEBI:CHEBI:58431"
FT                   /evidence="ECO:0000250|UniProtKB:O04197"
FT   CONFLICT        543
FT                   /note="P -> R (in Ref. 6; AK101514)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   597 AA;  66262 MW;  C5F759D821E3810A CRC64;
     MGGEAPEARR LDRAMSFGGA GSIPEEALHL VLGYVDDPRD REAVSLVCRR WHRIDALTRK
     HVTVPFCYAA SPAHLLARFP RLESLAVKGK PRAAMYGLIP EDWGAYARPW VAELAAPLEC
     LKALHLRRMV VTDDDLAALV RARGHMLQEL KLDKCSGFST DALRLVARSC RSLRTLFLEE
     CSIADNGTEW LHDLAVNNPV LETLNFHMTE LTVVPADLEL LAKKCKSLIS LKISDCDFSD
     LIGFFRMAAS LQEFAGGAFI EQGELTKYGN VKFPSRLCSL GLTYMGTNEM PIIFPFSALL
     KKLDLQYTFL TTEDHCQLIA KCPNLLVLAV RNVIGDRGLG VVADTCKKLQ RLRVERGDDD
     PGLQEEQGGV SQVGLTTVAV GCRELEYIAA YVSDITNGAL ESIGTFCKNL CDFRLVLLDR
     EERITDLPLD NGVRALLRGC TKLRRFALYL RPGGLSDTGL GYIGQYSGII QYMLLGNVGE
     TDDGLIRFAL GCENLRKLEL RSCCFSEQAL ARAIRSMPSL RYVWVQGYKA SKTGHDLMLM
     ARPFWNIEFT PPSSENANRM REDGEPCVDS QAQILAYYSL AGKRSDCPRS VVPLYPA
 
 
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