COI2_ORYSJ
ID COI2_ORYSJ Reviewed; 589 AA.
AC Q84QA7; A0A0P0VW20;
DT 09-DEC-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 03-AUG-2022, entry version 116.
DE RecName: Full=Coronatine-insensitive protein homolog 2 {ECO:0000305};
DE Short=OsCOI2 {ECO:0000303|PubMed:23320078};
GN Name=COI2 {ECO:0000303|PubMed:23320078};
GN OrderedLocusNames=Os03g0265500 {ECO:0000312|EMBL:BAF11563.1},
GN LOC_Os03g15880 {ECO:0000312|EMBL:ABF95134.1};
GN ORFNames=OJ1012B02.14 {ECO:0000312|EMBL:AAP06838.1},
GN OsJ_10247 {ECO:0000312|EMBL:EAZ26365.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000312|Proteomes:UP000059680};
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP INTERACTION WITH TIFY9/JAZ5; TIFY11C/JAZ11 AND TIFY11D/JAZ12, AND TISSUE
RP SPECIFICITY.
RX PubMed=23320078; DOI=10.1371/journal.pone.0052802;
RA Lee H.Y., Seo J.S., Cho J.H., Jung H., Kim J.K., Lee J.S., Rhee S.,
RA Do Choi Y.;
RT "Oryza sativa COI homologues restore jasmonate signal transduction in
RT Arabidopsis coi1-1 mutants.";
RL PLoS ONE 8:E52802-E52802(2013).
CC -!- FUNCTION: Involved in jasmonate (JA) signaling. Required for jasmonate
CC signaling in plant defense responses (By similarity). Component of
CC SCF(COI1) E3 ubiquitin ligase complexes, which may mediate the
CC ubiquitination and subsequent proteasomal degradation of target
CC proteins, including TIFY/JAZ family (By similarity).
CC {ECO:0000250|UniProtKB:O04197, ECO:0000250|UniProtKB:Q60EH4}.
CC -!- SUBUNIT: Interacts with TIFY9/JAZ5, TIFY11C/JAZ11 AND TIFY11D/JAZ12 in
CC a coronatine-dependent manner. {ECO:0000269|PubMed:23320078}.
CC -!- TISSUE SPECIFICITY: Expressed in roots, shoots, leaf sheaths and leaf
CC blades. {ECO:0000269|PubMed:23320078}.
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DR EMBL; AC135205; AAP06838.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF95134.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF11563.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS83403.1; -; Genomic_DNA.
DR EMBL; CM000140; EAZ26365.1; -; Genomic_DNA.
DR EMBL; AK066392; BAG89947.1; -; mRNA.
DR EMBL; AK100694; BAG94723.1; -; mRNA.
DR RefSeq; XP_015632448.1; XM_015776962.1.
DR RefSeq; XP_015632449.1; XM_015776963.1.
DR RefSeq; XP_015632450.1; XM_015776964.1.
DR RefSeq; XP_015632451.1; XM_015776965.1.
DR AlphaFoldDB; Q84QA7; -.
DR SMR; Q84QA7; -.
DR STRING; 4530.OS03T0265500-01; -.
DR PaxDb; Q84QA7; -.
DR PRIDE; Q84QA7; -.
DR EnsemblPlants; Os03t0265500-01; Os03t0265500-01; Os03g0265500.
DR EnsemblPlants; Os03t0265500-02; Os03t0265500-02; Os03g0265500.
DR GeneID; 4332349; -.
DR Gramene; Os03t0265500-01; Os03t0265500-01; Os03g0265500.
DR Gramene; Os03t0265500-02; Os03t0265500-02; Os03g0265500.
DR KEGG; osa:4332349; -.
DR eggNOG; KOG1947; Eukaryota.
DR HOGENOM; CLU_022456_1_0_1; -.
DR InParanoid; Q84QA7; -.
DR OMA; WLHEIAV; -.
DR OrthoDB; 444688at2759; -.
DR PlantReactome; R-OSA-6787011; Jasmonic acid signaling.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR GO; GO:0019005; C:SCF ubiquitin ligase complex; IBA:GO_Central.
DR GO; GO:0006952; P:defense response; IEA:UniProtKB-KW.
DR GO; GO:0031146; P:SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; IBA:GO_Central.
DR Gene3D; 3.80.10.10; -; 1.
DR InterPro; IPR041567; COI1_F-box.
DR InterPro; IPR032675; LRR_dom_sf.
DR InterPro; IPR041101; Transp_inhibit.
DR Pfam; PF18511; F-box_5; 1.
DR Pfam; PF18791; Transp_inhibit; 1.
PE 1: Evidence at protein level;
KW Jasmonic acid signaling pathway; Plant defense; Reference proteome;
KW Ubl conjugation pathway.
FT CHAIN 1..589
FT /note="Coronatine-insensitive protein homolog 2"
FT /id="PRO_0000434869"
FT DOMAIN 18..59
FT /note="F-box"
FT /evidence="ECO:0000255"
FT BINDING 87
FT /ligand="jasmonate"
FT /ligand_id="ChEBI:CHEBI:58431"
FT /evidence="ECO:0000250|UniProtKB:O04197"
FT BINDING 352
FT /ligand="jasmonate"
FT /ligand_id="ChEBI:CHEBI:58431"
FT /evidence="ECO:0000250|UniProtKB:O04197"
FT BINDING 414
FT /ligand="jasmonate"
FT /ligand_id="ChEBI:CHEBI:58431"
FT /evidence="ECO:0000250|UniProtKB:O04197"
FT BINDING 501
FT /ligand="jasmonate"
FT /ligand_id="ChEBI:CHEBI:58431"
FT /evidence="ECO:0000250|UniProtKB:O04197"
SQ SEQUENCE 589 AA; 66265 MW; 24E53DB072804D34 CRC64;
MGGEAGERRL GRAMSFGIPD VALGLVMGFV EDPWDRDAIS LVCRHWCRVD ALSRKHVTVA
MAYSTTPDRL FRRFPCLESL KLKAKPRAAM FNLIPEDWGG SASPWIRQLS ASFHFLKALH
LRRMIVSDDD LDVLVRAKAH MLSSFKLDRC SGFSTSSLAL VARTCKKLET LFLEDSIIAE
KENDEWIREL ATNNSVLETL NFFLTDLRAS PAYLTLLVRN CRRLKVLKIS ECFMLDLVDL
FRTAEILQDF AGGSFDDQGQ VEESRNYENY YFPPSLLRLS LLYMGTKEMQ VLFPYGAALK
KLDLQFTFLS TEDHCQLVQR CPNLEILEVR DVIGDRGLEV VAQTCKKLQR LRVERGDDDQ
GGLEDEHGMV TQVGLMAVAQ GCPHLEYWAV HVTDITNAAL EAIGTYSSSL NDFRLVLLDR
EANITESPLD NGVRALLRGC TKLRRFAFYV RPGALSDVGL GYIGEFSKTI RYMLLGNVGE
SDQGLLQLST GCPSLQKLEL RGCFFSERAL AVAVLQLKSL RYLWVQGYKA SPNGTDLMAM
VRPFWNIEII APNQDEVCPD GQAQILAYYS LAGMRSDYPH SVIPLYPSV
