COL34_CAEEL
ID COL34_CAEEL Reviewed; 299 AA.
AC P34687; Q20087;
DT 01-FEB-1994, integrated into UniProtKB/Swiss-Prot.
DT 02-AUG-2002, sequence version 2.
DT 03-AUG-2022, entry version 122.
DE RecName: Full=Cuticle collagen 34;
DE AltName: Full=Abnormal ray morphology protein 4;
GN Name=col-34; Synonyms=ram-4; ORFNames=F36A4.10;
OS Caenorhabditis elegans.
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
OC Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
OC Caenorhabditis.
OX NCBI_TaxID=6239;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=Bristol N2;
RX PubMed=1398138; DOI=10.1016/0378-1119(92)90102-u;
RA Bird D.M.;
RT "Sequence comparison of the Caenorhabditis elegans dpy-13 and col-34 genes,
RT and their deduced collagen products.";
RL Gene 120:261-266(1992).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Yu R.Y., Chow K.L.;
RT "RAM-4, a collagen, is involved in ray morphogenesis of Caenorhabditis
RT elegans male tail.";
RL Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Bristol N2;
RX PubMed=9851916; DOI=10.1126/science.282.5396.2012;
RG The C. elegans sequencing consortium;
RT "Genome sequence of the nematode C. elegans: a platform for investigating
RT biology.";
RL Science 282:2012-2018(1998).
CC -!- FUNCTION: Nematode cuticles are composed largely of collagen-like
CC proteins. The cuticle functions both as an exoskeleton and as a barrier
CC to protect the worm from its environment.
CC -!- SUBUNIT: Collagen polypeptide chains are complexed within the cuticle
CC by disulfide bonds and other types of covalent cross-links.
CC -!- SIMILARITY: Belongs to the cuticular collagen family. {ECO:0000305}.
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DR EMBL; M80650; AAA27985.1; -; Genomic_DNA.
DR EMBL; AF410845; AAL76233.1; -; mRNA.
DR EMBL; FO081153; CCD69528.1; -; Genomic_DNA.
DR PIR; JC1448; JC1448.
DR PIR; T29956; T29956.
DR RefSeq; NP_500520.1; NM_068119.4.
DR AlphaFoldDB; P34687; -.
DR SMR; P34687; -.
DR STRING; 6239.F36A4.10; -.
DR EPD; P34687; -.
DR PaxDb; P34687; -.
DR PeptideAtlas; P34687; -.
DR EnsemblMetazoa; F36A4.10.1; F36A4.10.1; WBGene00000611.
DR GeneID; 177188; -.
DR KEGG; cel:CELE_F36A4.10; -.
DR UCSC; F36A4.10; c. elegans.
DR CTD; 177188; -.
DR WormBase; F36A4.10; CE07185; WBGene00000611; col-34.
DR eggNOG; KOG3544; Eukaryota.
DR GeneTree; ENSGT00970000195912; -.
DR HOGENOM; CLU_001074_4_2_1; -.
DR InParanoid; P34687; -.
DR OMA; LGCNPAH; -.
DR OrthoDB; 1554466at2759; -.
DR PhylomeDB; P34687; -.
DR PRO; PR:P34687; -.
DR Proteomes; UP000001940; Chromosome IV.
DR Bgee; WBGene00000611; Expressed in pharyngeal muscle cell (C elegans) and 3 other tissues.
DR GO; GO:0005581; C:collagen trimer; IEA:UniProtKB-KW.
DR GO; GO:0005576; C:extracellular region; NAS:UniProtKB.
DR GO; GO:0042302; F:structural constituent of cuticle; NAS:UniProtKB.
DR GO; GO:0040002; P:collagen and cuticulin-based cuticle development; NAS:UniProtKB.
DR InterPro; IPR002486; Col_cuticle_N.
DR InterPro; IPR008160; Collagen.
DR Pfam; PF01484; Col_cuticle_N; 1.
DR Pfam; PF01391; Collagen; 2.
DR SMART; SM01088; Col_cuticle_N; 1.
PE 2: Evidence at transcript level;
KW Collagen; Cuticle; Disulfide bond; Reference proteome; Repeat.
FT CHAIN 1..299
FT /note="Cuticle collagen 34"
FT /id="PRO_0000127592"
FT REGION 105..282
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 216..278
FT /note="Triple-helical region"
FT COMPBIAS 105..168
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 181..202
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 211..236
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 145
FT /note="C -> W (in Ref. 1; AAA27985)"
FT /evidence="ECO:0000305"
FT CONFLICT 189
FT /note="P -> K (in Ref. 1; AAA27985)"
FT /evidence="ECO:0000305"
FT CONFLICT 199..210
FT /note="GTPGEPGVPAQS -> EHQESQECPRG (in Ref. 1; AAA27985)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 299 AA; 29336 MW; 215780080E5C7212 CRC64;
MDLETRIKAY RFVAYSAVAF SVVAVISVCV TLPMVYNYVH HVKRTMHNEI TFCKGSAKDI
WNEVHALKSL PNSNRTARQA YNDAAVTGGG AQSGSCESCC LPGPPGPAGT PGKPGRPGKP
GAPGLPGNPG RPPQQPCEPI TPPPCKPCPQ GPPGPPGPPG PPGDSGEPGS PGLPGQDAAP
GEPGPKGPPG PPGAPGAPGT PGEPGVPAQS EPLIPGEPGP PGEAGPQGPP GSPGQPGADG
SPGQPGPKGP NGPDGQPGAD GNPGAPGPAG PPGSPGERGI CPKYCAIDGG VFFEDGTRR