COLD1_ORYSI
ID COLD1_ORYSI Reviewed; 468 AA.
AC A2XX57; Q01HU0;
DT 29-APR-2015, integrated into UniProtKB/Swiss-Prot.
DT 20-MAR-2007, sequence version 1.
DT 25-MAY-2022, entry version 58.
DE RecName: Full=GPCR-type G protein COLD1 {ECO:0000305};
DE AltName: Full=Protein CHILLING TOLERANCE DIVERGENCE 1 {ECO:0000303|PubMed:25728666};
GN Name=COLD1 {ECO:0000303|PubMed:25728666};
GN ORFNames=B0403H10-OSIGBa0105A11.8 {ECO:0000312|EMBL:CAH67856.1},
GN OsI_17258 {ECO:0000312|EMBL:EAY95417.1};
OS Oryza sativa subsp. indica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39946;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Guang-Lu-Ai No.4;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 93-11;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [3]
RP FUNCTION.
RX PubMed=25728666; DOI=10.1016/j.cell.2015.01.046;
RA Ma Y., Dai X., Xu Y., Luo W., Zheng X., Zeng D., Pan Y., Lin X., Liu H.,
RA Zhang D., Xiao J., Guo X., Xu S., Niu Y., Jin J., Zhang H., Xu X., Li L.,
RA Wang W., Qian Q., Ge S., Chong K.;
RT "COLD1 confers chilling tolerance in rice.";
RL Cell 160:1209-1221(2015).
CC -!- FUNCTION: Involved in chilling tolerance.
CC {ECO:0000269|PubMed:25728666}.
CC -!- SUBUNIT: Interacts with GPA1/RGA1. {ECO:0000250|UniProtKB:Q7X7S8}.
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250|UniProtKB:Q7X7S8};
CC Multi-pass membrane protein {ECO:0000255}. Endoplasmic reticulum
CC membrane {ECO:0000250|UniProtKB:Q7X7S8}; Multi-pass membrane protein
CC {ECO:0000255}.
CC -!- MISCELLANEOUS: In cold tolerant cultivars (AC Q7X7S8) Met-187 is
CC replaced by Lys-187. This polymorphism is associated with divergence in
CC chilling tolerance of rice cultivars. COLD1 confers adaptation of
CC japonica rice to chilling and originated from the Chinese wild
CC populations of Oryza rufipogon. {ECO:0000269|PubMed:25728666}.
CC -!- SIMILARITY: Belongs to the Golgi pH regulator (TC 1.A.38) family.
CC {ECO:0000305}.
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DR EMBL; CR855228; CAH67856.1; -; Genomic_DNA.
DR EMBL; CM000129; EAY95417.1; -; Genomic_DNA.
DR AlphaFoldDB; A2XX57; -.
DR STRING; 39946.A2XX57; -.
DR TCDB; 1.A.38.1.3; the golgi ph regulator (gphr) family.
DR EnsemblPlants; BGIOSGA014418-TA; BGIOSGA014418-PA; BGIOSGA014418.
DR Gramene; BGIOSGA014418-TA; BGIOSGA014418-PA; BGIOSGA014418.
DR HOGENOM; CLU_030540_1_0_1; -.
DR OMA; HFNFYHR; -.
DR Proteomes; UP000007015; Chromosome 4.
DR GO; GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0051020; F:GTPase binding; IEA:EnsemblPlants.
DR GO; GO:0070417; P:cellular response to cold; IEA:EnsemblPlants.
DR InterPro; IPR025969; ABA_GPCR_dom.
DR InterPro; IPR022535; Golgi_pH-regulator_cons_dom.
DR InterPro; IPR015672; GPHR/GTG.
DR PANTHER; PTHR15948; PTHR15948; 1.
DR Pfam; PF12430; ABA_GPCR; 1.
DR Pfam; PF12537; GPHR_N; 1.
PE 3: Inferred from homology;
KW Cell membrane; Coiled coil; Endoplasmic reticulum; Lipoprotein; Membrane;
KW Myristate; Reference proteome; Stress response; Transmembrane;
KW Transmembrane helix.
FT INIT_MET 1
FT /note="Removed"
FT /evidence="ECO:0000250|UniProtKB:Q7X7S8"
FT CHAIN 2..468
FT /note="GPCR-type G protein COLD1"
FT /id="PRO_0000432810"
FT TRANSMEM 7..27
FT /note="Helical; Name=1"
FT /evidence="ECO:0000255"
FT TRANSMEM 45..65
FT /note="Helical; Name=2"
FT /evidence="ECO:0000255"
FT TRANSMEM 82..102
FT /note="Helical; Name=3"
FT /evidence="ECO:0000255"
FT TRANSMEM 112..132
FT /note="Helical; Name=4"
FT /evidence="ECO:0000255"
FT TRANSMEM 153..173
FT /note="Helical; Name=5"
FT /evidence="ECO:0000255"
FT TRANSMEM 297..319
FT /note="Helical; Name=6"
FT /evidence="ECO:0000255"
FT TRANSMEM 345..365
FT /note="Helical; Name=7"
FT /evidence="ECO:0000255"
FT TRANSMEM 389..409
FT /note="Helical; Name=8"
FT /evidence="ECO:0000255"
FT TRANSMEM 437..457
FT /note="Helical; Name=9"
FT /evidence="ECO:0000255"
FT COILED 243..279
FT /evidence="ECO:0000255"
FT LIPID 2
FT /note="N-myristoyl glycine"
FT /evidence="ECO:0000250|UniProtKB:Q7X7S8"
SQ SEQUENCE 468 AA; 53407 MW; 7A908F405918016B CRC64;
MGWGAVVYEG GVVGASLVGL GWAGLWFLNR RLYKEYEERR ALVQILFGLV FAFSCNLFQL
VLFEILPVLS KHARFLNWHL DLFCLILLLV FVLPYYHCYL LLRNSGVRRE RALLVAALFL
LVFLYGFWRM GIHFPMPSPE KGFFTMPQLV SRIGVIGVSV MAVLSGFGAV NLPYSYLSLF
IREIDEMDIK TLERQLMQSM ETCIAKKKKI VLSKMEMERI QGSEEKLKAR SFLKRIVGTV
VRSVQEDQTE QDIKSLDAEV QALEELSKQL FLEIYELRQA KIAAAFSRTW RGHAQNLLGY
ALSVYCVYKM LKSLQSVVFK EAGSVDPVTM TITIFLRHFD IGIDVTLLSQ YISLIFIGML
VVISVRGFLA NVMKFFFAVS RVGSGSTTNV VLFLSEIMGM YFISSILLIR KSLANEYRVI
ITDVLGGDIQ FDFYHRWFDA IFVASAFLSL LLISAQYTSR QTDKHPID
